View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21168_low_8 (Length: 386)
Name: NF21168_low_8
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21168_low_8 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 11996510 - 11996879
Alignment:
| Q |
17 |
ctaaaaattgtttgaaataatctgaaaggatgttatgtcaacgaagagaaagaaaataacatgtttggaaaatgaagaannnnnnnggttttctttcatt |
116 |
Q |
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| T |
11996510 |
ctaaaaattgtttgatataatctgaaaggatgttatgtcaacgaagagaaagaaaataacatgtttggaaaatgaagaatttttttggttttctttcatt |
11996609 |
T |
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| Q |
117 |
ttggtccctgggaatacatcagcagtccatgagctcttttcgtttgccacatccgggactaaagttactaacaaattgaaggatctaattggggttttgt |
216 |
Q |
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| T |
11996610 |
ttggtccctgggaatacatcagcagtccatgagctcttttcgtttgccacatccgggactaaagttactaacaaattgaaggatctaattggggttttat |
11996709 |
T |
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| Q |
217 |
tgagtcagagaccaatgtgacggtgagttacgttttcagccatcaatcaccaccaacttgcctctcccatgagtcttccacaatcaattcatcaactccc |
316 |
Q |
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| T |
11996710 |
tgagtcagagaccaatgtgacggtgagttacgctttcagccatcaatcaccaccaacttgcctctcccatgagtcttccacaatcaattcatcaactccc |
11996809 |
T |
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| Q |
317 |
caatcttcatagctgcacaattttgtaaaaacagaaaacgcatgacatgaaggaaaattcagcttaagtc |
386 |
Q |
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| T |
11996810 |
caatcttcatagctgcacaattttgtaaaaacagaaaacgcatgacatgaatgaaaattcagcttaagtc |
11996879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 250 - 386
Target Start/End: Complemental strand, 106467 - 106331
Alignment:
| Q |
250 |
tttcagccatcaatcaccaccaacttgcctctcccatgagtcttccacaatcaattcatcaactccccaatcttcatagctgcacaattttgtaaaaaca |
349 |
Q |
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| T |
106467 |
tttcagccatcaatcaccaccaacttgcctcttccatgagtcttccacaatcaattcatcaactccccagtcttcatagctgcacaattttgcaaaaaca |
106368 |
T |
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| Q |
350 |
gaaaacgcatgacatgaaggaaaattcagcttaagtc |
386 |
Q |
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| T |
106367 |
gaaaacgcatgacatgaaggaaaattcaacttaagtc |
106331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 106854 - 106743
Alignment:
| Q |
105 |
ttttctttcattttggtccctgggaatacatcagcagtccatgagctcttttcgtttgccacatccgggactaaagttactaacaaattgaaggatctaa |
204 |
Q |
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| T |
106854 |
ttttttttcattttggtcgctgggaatacatcagcagtccatgtgcctctttcattttccacatcagagactaaattgactaacaaattgaaggatctaa |
106755 |
T |
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| Q |
205 |
ttggggttttgt |
216 |
Q |
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| T |
106754 |
taggggttttgt |
106743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 36635034 - 36634952
Alignment:
| Q |
258 |
atcaatcaccaccaacttgcctctcccatgagtcttccacaatcaattcatcaactccccaatcttcatagctgcacaatttt |
340 |
Q |
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| T |
36635034 |
atcaatcgccacccacttgtctcttccaggagtcttccacaatcagctcatcaactccccaatcttcatagctggacaatttt |
36634952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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