View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21168_low_9 (Length: 361)
Name: NF21168_low_9
Description: NF21168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21168_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 29154497 - 29154219
Alignment:
| Q |
1 |
tccagttaaatgaaatgtcaaacgttgaatcaaagaccatctttgatgaatatcaaaagaaaatatttttcatatagaaatgctgtgaacctatcaacac |
100 |
Q |
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| T |
29154497 |
tccagttaaatgaaatgtcaaacgttgaatcaaagaccatctttgatgaatatcaaaagaaaatatttttcatatagaaatgctgtgaatctatcaacac |
29154398 |
T |
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| Q |
101 |
cttattgatatgagcgtgacatttcaggagcaatgttgggttatatggaaccacataccaactaaccaactatacatannnnnnnaaaacataactctag |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |
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| T |
29154397 |
cttattgatatgagcgtgacatttcaggatcaatgttgggttatatggaaccacataccaactaaccaactatacatatttttttaaaacatagctatag |
29154298 |
T |
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| Q |
201 |
aatctcagcgccaataaacatgttagccgctcttatcaaaaggagacgtgtgaaaaatatatattttttggataatattttg |
282 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29154297 |
aatctcagcgccaatagacatgttagccgctcttatcaaa---agacgtgtgaaaaatatatattttttggataatattttg |
29154219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 29154224 - 29154191
Alignment:
| Q |
311 |
atttcggtaattgaaacaagatgaacccatatat |
344 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
29154224 |
attttggtaattgaaacaagatgaacccatatat |
29154191 |
T |
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