View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21169_high_12 (Length: 305)
Name: NF21169_high_12
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 34441847 - 34441563
Alignment:
| Q |
9 |
acatcatcatatagattacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaa------aata |
102 |
Q |
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| T |
34441847 |
acatcaacatatagattacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaatttgaaaata |
34441748 |
T |
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| Q |
103 |
gattacaataacaaactatgagaatattactccaacaaactcaacccttatattctgatctgcttatttatatctcaagggtatcatcattattaaaaga |
202 |
Q |
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| T |
34441747 |
gattacaataacaaactatgagaatattactccaaaaaactcaacccttatattct---ctgcttatttatatctcaagggtatcatcattattaaaaga |
34441651 |
T |
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| Q |
203 |
tatcaagtactgttaatgaaattggagggattatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctg |
290 |
Q |
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| T |
34441650 |
tatcaagtactgttaatgaaattggagggattatgacattcatctcattgccaggattctgaagtggactttgttgtggtgctatctg |
34441563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 34467380 - 34467300
Alignment:
| Q |
210 |
tactgttaatgaaattggagggattatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctg |
290 |
Q |
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| T |
34467380 |
tactgttaatgaaactggagggatcatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctg |
34467300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 34451464 - 34451371
Alignment:
| Q |
197 |
aaaagatatcaagtactgttaatgaaattggagggattatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctg |
290 |
Q |
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| T |
34451464 |
aaaacatatcaagtattgttaatgacgttggttggactatgacattcatctcattgccaggattctgaagtggacttgtttgtggtgctatctg |
34451371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 34451613 - 34451538
Alignment:
| Q |
78 |
gatttacaatttgaatttgaaaatagattacaataacaaactatgagaatattactccaacaaactcaacccttat |
153 |
Q |
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| T |
34451613 |
gatttacaatttgaatttgaaaacagagtaaggtaacaaactatgagaatattactccaacagattcaacccttat |
34451538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 334513 - 334628
Alignment:
| Q |
25 |
tacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaaaatagattacaataacaaac-tatga |
123 |
Q |
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| T |
334513 |
tacaaaggttgagagaatatctagagtttgttacaacaaacatcttagattaggatttacaatttgaatttagaaatagaatacaacatccagcttatga |
334612 |
T |
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| Q |
124 |
gaatattactccaaca |
139 |
Q |
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| T |
334613 |
gaatactactccaaca |
334628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 17881572 - 17881674
Alignment:
| Q |
44 |
tctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaaaa-------tagattacaataacaaactatgagaatattactcca |
136 |
Q |
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| T |
17881572 |
tctacagtttgttacacgaaacacattggattagg-tttacaatttgaatttaaaaattaaaaatagattacaataacaaactatgaggatattagttca |
17881670 |
T |
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| Q |
137 |
acaa |
140 |
Q |
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|||| |
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| T |
17881671 |
acaa |
17881674 |
T |
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