View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21169_high_17 (Length: 247)
Name: NF21169_high_17
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 27845706 - 27845786
Alignment:
| Q |
125 |
aacattttcattacacatgctatttatgtgtagcctaattcagtgagattcatttctattttaaccgattaaagaccatgt |
205 |
Q |
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| T |
27845706 |
aacattttcattacacatgctatttatgtgtagcctaattcagtgagattcatttctattttaaccgattaaagaccatgt |
27845786 |
T |
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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 27845659 - 27845721
Alignment:
| Q |
48 |
tagatcagacttaaaacatatcaattttgaaattgaccttatgctaacaacattttcattacac |
111 |
Q |
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| T |
27845659 |
tagatcagacttaaa-catatatattttgaaattgaccttatgctaacaacattttcattacac |
27845721 |
T |
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