View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21169_high_4 (Length: 451)
Name: NF21169_high_4
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 2 - 434
Target Start/End: Original strand, 7368699 - 7369132
Alignment:
| Q |
2 |
atgctgatttatggggtccttcacccctgccctcttcaagtttctacaactattgtattttctttgtagacacatttactaaatgcacttgtatctattt |
101 |
Q |
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| T |
7368699 |
atgctgatttatggggtccttcacccctgccctcttcaagtttctaaaactattatattttctttgtagacacatttactaaatgcacttgtatctattt |
7368798 |
T |
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| Q |
102 |
actccatatttctcagatttatcccattgacaaatgtttatcaattgagggaattgaagcctataaattgagcataaaaaatcaaagagaggaacgagga |
201 |
Q |
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| T |
7368799 |
actccatatttctcagatttttcccattgacaaatgtttatcaattgagggaattgaagcctataaattgagcacaaaaaatcaaagagaggaacgagga |
7368898 |
T |
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| Q |
202 |
ggagcttgctcttgctttgtggatgttggtggggtggtacaatgggtgctgcaactgagctcataattgacactgaaatatgtaaacacttcaccatgca |
301 |
Q |
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| T |
7368899 |
ggagcttgctcttgctttgtagatgttggtggggtggtacaatgggtgctgcaactgagctcataattgacactgaa--atgtaaacacttcaccatgca |
7368996 |
T |
|
| Q |
302 |
cttttaccttttaggatgatatatacattagttaaattcatgt---ataacaagctgcttagcgtttgaattataacannnnnnnaacgtagtacatatg |
398 |
Q |
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| T |
7368997 |
cttttaccttttaggatgatatatacattagttaaattcatgtataataacaagctgcttagcgtttgaattataacatttttttaacgtagtacatatg |
7369096 |
T |
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| Q |
399 |
agaaattagaactttgtatatattaatgctcatcct |
434 |
Q |
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| T |
7369097 |
agaaattagaactttgtatatattaatgctcatcct |
7369132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 200 - 350
Target Start/End: Original strand, 7290050 - 7290200
Alignment:
| Q |
200 |
gaggagcttgctcttgctttgt-ggatgttggtggggt-ggtacaatgggtgctgcaactgagctcataattgacactgaaatatgtaaacacttcacca |
297 |
Q |
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| T |
7290050 |
gaggagcttgctcttgctttgttgggtgttggtggggttggtacaatgggtgctgcagctgagctcataattgacactgaa--atgtaaacacttcaaca |
7290147 |
T |
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| Q |
298 |
tgcacttttaccttttaggatgatatatacattagttaaa-ttcatgtataaca |
350 |
Q |
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| T |
7290148 |
tgcagttttacatttt-ggatgatatgtacattagttaaatttcatgtataaca |
7290200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 7377476 - 7377529
Alignment:
| Q |
47 |
acaactattgtattttctttgtagacacatttactaaatgcacttgtatctattt |
101 |
Q |
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| T |
7377476 |
acaactattgtattttctttcttgacacattttctaaat-cacttgtatctattt |
7377529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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