View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21169_low_1 (Length: 605)
Name: NF21169_low_1
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 52409786 - 52409214
Alignment:
| Q |
18 |
gattcttgatagtagttgtgtttaaacatggccaactaatctcttgaatttgagcacaaaaaacatcatattccacgcctttcctcttctctgcgtctgc |
117 |
Q |
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| T |
52409786 |
gattcttgatagtagttgtgtttaaacatggccaactaatctcttgaatttgagcacaaaaaacatcatattccacgcctttcctcttctctgcgtctgc |
52409687 |
T |
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| Q |
118 |
ctatccctcgcccccaaaaagttatgtactataacctttacttaggaggtgcatgatattaattgttatagtttaatctcctgtgatatgatgatgagag |
217 |
Q |
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| T |
52409686 |
ctatccctcgcccccaaaaagttatgtact------------taggaggtgcatgatattaattgttatagtttaatctcctgtgatatgatgatgagag |
52409599 |
T |
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| Q |
218 |
aaagaactctaattccaacatttgtcttttgggctttccttacattaatcacaccaacacttattctcttgtcagagaattcgaaagccgaccttgaatt |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409598 |
aaagaactctaattccaacatttgtcttctgggctttccttacattaatcacaccaacacttattctcttgtcagagaattcgaaagccgaccttgaatt |
52409499 |
T |
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| Q |
318 |
aaatggtaacaaaccaatcttctaacttagttctaacacttcttattaaccaaaattgatatagttaatttgcaccttaattaggcttgtgtacaattaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52409498 |
aaatggtaacaaaccaatcttctaacttagttctaacacttcttattaaccaaaattgatatatttaatttgcaccttaattaggcttgtgtacaattaa |
52409399 |
T |
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| Q |
418 |
tctttatgtccaactttgcaggaaatattacagagacaatgaaggtaagaagaatgatcgggcacacacagagtaacatcataagaacagcaccactgcc |
517 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409398 |
tctttatttccaactttgcaggaaatattacagagacaatgaaggtaagaagaatgatcgggcacacacagagtaacatcataagaacagcaccactgcc |
52409299 |
T |
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| Q |
518 |
agccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccattgccaacttcatctcactcg |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52409298 |
agccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccattgccaacttcatcacactcg |
52409214 |
T |
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