View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21169_low_11 (Length: 311)
Name: NF21169_low_11
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 24208657 - 24208385
Alignment:
| Q |
15 |
agcagagatagtcaacaaggaaaaagcaaaaatgaatactccacttgaatcttcttgtcaacaaaattgatttggtttaacttttcattacaccatatta |
114 |
Q |
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| T |
24208657 |
agcagagatagtcaacaaggaaaaagcaaaaatgaatactccacttgaatcttcttgtcaacaaaattgatttggtttaacttttcattacaccatatta |
24208558 |
T |
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| Q |
115 |
ggtgatcttttgtcaactttttcatgtttatcacctttgaaatcaacctcaatcctacttgtgctagaaactgctcatgatccagttgaatttgatcctc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24208557 |
ggtgatcttttgtcaactttttcatgtttatcacctttgaaatcaacctcaatcctacttgtgctagaaactgctcatgatccagttgaatttgatcctc |
24208458 |
T |
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| Q |
215 |
attatgtttttggaacttcctcactatgcaatttccacttcttaatctttccttgagttttctctccttctac |
287 |
Q |
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| T |
24208457 |
attgtgtttttggaacttccttactatgcaatttccacttcttaatctttccttgagttttctctccttctac |
24208385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 24218043 - 24217872
Alignment:
| Q |
26 |
tcaacaaggaaaaagcaaaaatgaatactccacttgaatcttcttgtcaacaaaattgatttggtttaacttttcattacaccatattaggtgatctttt |
125 |
Q |
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| T |
24218043 |
tcaacatggaaaaagtaaaatagaatactccatcttaatcttcctgtcaacaaatttcatttgctttaacttttcactacaccatattagatgatctttt |
24217944 |
T |
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| Q |
126 |
gtcaactttttcatgtttatcacctttgaaatcaacctcaatcctacttgtgctagaaactgctcatgatcc |
197 |
Q |
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| T |
24217943 |
cttaactttttcatgtttatcacctttgaaatcaacctcaatcctacttgagccatcaactgctcatgatcc |
24217872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 258
Target Start/End: Original strand, 17832790 - 17832954
Alignment:
| Q |
88 |
ggtttaacttttcattacaccatattaggtgatcttttgtcaactttttcatgtttatcacctttgaaatcaacctcaatcctacttgtgctagaaactg |
187 |
Q |
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|||| ||||||||| | ||||||| || || |||||| |||| | | ||||||||||||| |||||||||| | |||||| ||||| || | || || |
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| T |
17832790 |
ggttcaacttttcactgcaccatagtacttgttcttttctcaattgtgacatgtttatcacccttgaaatcaatcgcaatccaacttgagcaaccaattg |
17832889 |
T |
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| Q |
188 |
ctcatgatccagttgaatttgatcctcattatgtttttggaacttcctcactatgcaatttccacttctta |
258 |
Q |
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| T |
17832890 |
ctcatgatcaagttga------tcctcatggtgcttttggaacttcttcactatgcaatttccagttctta |
17832954 |
T |
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