View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21169_low_12 (Length: 310)
Name: NF21169_low_12
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 9213614 - 9213332
Alignment:
| Q |
13 |
aaaattggaacctcatacaccaagccaaatctatgttccaaacatcctcgtcagaatctaactcagaaatagatcttatctccacaaacccacttgacaa |
112 |
Q |
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| T |
9213614 |
aaaattggaacctagtacaccaagctaaatctatgttccaaacatcctcgtcagaatctaactcagaaatagatcttatctccacaaatccacttgacaa |
9213515 |
T |
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| Q |
113 |
atctatgttccaaacattcgccgacatcggtatcgtctccggttccggagaagacaccgatgagacacaaaaaacaatgaaccaaaaattgcaacaaatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9213514 |
atctatgttccaaacattcgccgacatcggtatcgtctccggttccggagaagacaccgatgagacacaaaaaacaatgaaccaaaaattgcaacaaatg |
9213415 |
T |
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| Q |
213 |
aataacattgtttcatcatgttctattgattctgaaaattctgattcagaatattgtccaccattagcaacaccaacaaaaac |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9213414 |
aataacattgtttcatcatgttctattgattctgaaaattctgattcagaatattgtccaccattagcaacaccaacaaaaac |
9213332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 9194413 - 9194514
Alignment:
| Q |
13 |
aaaattggaacctcatacaccaagccaaatctatgttccaaacatcctcgtcagaatctaactcagaaatagatcttatctccacaaacccacttgacaa |
112 |
Q |
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|||||||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||| | ||||||||| |||||| | |||| ||||||| |
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| T |
9194413 |
aaaattggaacctcgtgcaccaagctaaatctatgttccaaacatcctcgtcagaatcaaactcaaatttagatcttacctccaccaccccatttgacaa |
9194512 |
T |
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| Q |
113 |
at |
114 |
Q |
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|| |
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| T |
9194513 |
at |
9194514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 9194627 - 9194690
Alignment:
| Q |
221 |
tgtttcatcatgttctattgattctgaaaattctgattcagaatattgtccaccattagcaaca |
284 |
Q |
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|||||||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
9194627 |
tgtttcatcatgttctttagattctgaagattctgattcagaatattgtccactgttagcaaca |
9194690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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