View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21169_low_16 (Length: 263)
Name: NF21169_low_16
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 2608588 - 2608359
Alignment:
| Q |
24 |
aagccaaagcctagtcctccaccaccttcaccaacaccatgtcctccaacaccttcgacaacacctcctactccttcaacatcacaaaaatgtcctagtg |
123 |
Q |
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| T |
2608588 |
aagccaaagcctagtcctccaccaccttcatcaacaccatgtcctccaacaccttcaacaacacctcctactccttcaacatcacaaaaatgtcctagtg |
2608489 |
T |
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| Q |
124 |
acacattaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaagtgttgtgcattgcttcaaggttt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608488 |
acacattaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaagtgttgtgcattgcttcaaggttt |
2608389 |
T |
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| Q |
224 |
ggttgatttagatgcagcaatttgcctttg |
253 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2608388 |
ggttgatttagatgcagcaatttgcctttg |
2608359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 2592235 - 2592069
Alignment:
| Q |
87 |
cctcctactccttcaacatcacaaaaatgtcctagtgacacattaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtc |
186 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2592235 |
cctccaactccttcaacatcacaaaaatgtcctagtgacacattaaagctaggtgtatgtgctgatgttctaggacttgttaatgttattgttggaagtc |
2592136 |
T |
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| Q |
187 |
ctgcttcaagcaagtgttgtgcattgcttcaaggtttggttgatttagatgcagcaatttgcctttg |
253 |
Q |
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| T |
2592135 |
ctgcttcaagcaagtgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttg |
2592069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 2578486 - 2578320
Alignment:
| Q |
87 |
cctcctactccttcaacatcacaaaaatgtcctagtgacacattaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtc |
186 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2578486 |
cctcctactccttcaacagcacaaaaatgccctagtgacacattaaagctaggtgtatgtgctgatgttctaggacttgttaatgttattgttggaagtc |
2578387 |
T |
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| Q |
187 |
ctgcttcaagcaagtgttgtgcattgcttcaaggtttggttgatttagatgcagcaatttgcctttg |
253 |
Q |
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| T |
2578386 |
ctgcttcaagcaactgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttg |
2578320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 2599989 - 2599823
Alignment:
| Q |
87 |
cctcctactccttcaacatcacaaaaatgtcctagtgacacattaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtc |
186 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |
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| T |
2599989 |
cctcctactccttcaacagcacaaaaatgccctagtgacacattaaagctaggtgtatgtgctgatgttctaggacttgttaatgttattgttggaattc |
2599890 |
T |
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| Q |
187 |
ctgcttcaagcaagtgttgtgcattgcttcaaggtttggttgatttagatgcagcaatttgcctttg |
253 |
Q |
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||||||||||||| |||||| ||||| |||||||||||| |||||| || |||||| |||| ||||| |
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| T |
2599889 |
ctgcttcaagcaattgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttg |
2599823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 254
Target Start/End: Original strand, 49331276 - 49331404
Alignment:
| Q |
129 |
ttaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtcctgcttca---agcaagtgttgtgcattgcttcaaggtttgg |
225 |
Q |
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|||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| || || ||||||||| | | ||||||||| |
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| T |
49331276 |
ttaaagttaggggtttgtgctgatgttttaggactggttaatgttgttgttggaaatcctgcttcaggtagtaattgttgtgcaataatcaaaggtttgg |
49331375 |
T |
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| Q |
226 |
ttgatttagatgcagcaatttgcctttgc |
254 |
Q |
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|||||| ||||| ||| |||| |||||| |
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| T |
49331376 |
ctgatttggatgctgcactttgtctttgc |
49331404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 254
Target Start/End: Original strand, 49329000 - 49329128
Alignment:
| Q |
129 |
ttaaagctaggtgtttgtgctgatgttttaggacttgttaatgttattgttggaagtcctgcttca---agcaagtgttgtgcattgcttcaaggtttgg |
225 |
Q |
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||||||||||| |||||||||||| ||||||| | ||||||||| || |||||| |||| ||||| || || |||||||||||| || | ||||||| |
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| T |
49329000 |
ttaaagctaggggtttgtgctgatcttttagggttggttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttgg |
49329099 |
T |
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| Q |
226 |
ttgatttagatgcagcaatttgcctttgc |
254 |
Q |
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|||||| || || ||| |||| |||||| |
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| T |
49329100 |
ctgatttggaggctgcactttgtctttgc |
49329128 |
T |
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