View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21169_low_17 (Length: 254)
Name: NF21169_low_17
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 45270877 - 45271113
Alignment:
| Q |
1 |
tcattcataaggtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtac |
100 |
Q |
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| T |
45270877 |
tcattcataaggtacacaattaattaaataaaataaaa--gctttgatcgata-taactgaattacgtacaaaaggtggcagtgttctgtgtgttggtac |
45270973 |
T |
|
| Q |
101 |
cggcgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtc |
200 |
Q |
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|||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45270974 |
cggccatttggttctttctaccagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtc |
45271073 |
T |
|
| Q |
201 |
atagacaccggccttaacgtagataacatatctgcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
45271074 |
atagacaccggccttaacgtagataacatatctgtctttg |
45271113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 45282760 - 45282887
Alignment:
| Q |
113 |
tcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggc |
212 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282760 |
tctttctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggc |
45282859 |
T |
|
| Q |
213 |
cttaacgtagataacatatctgcctttg |
240 |
Q |
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| T |
45282860 |
cttaacgtagataacatatctgcctttg |
45282887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 45274410 - 45274646
Alignment:
| Q |
5 |
tcataaggtacacaattaattaaataaaataaaaaa-gctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccgg |
103 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||||||| |||||||| ||||||||||||| |||| ||| | | | | |||||||||| |
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| T |
45274410 |
tcataaggtatacaattaatcaaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccgg |
45274509 |
T |
|
| Q |
104 |
cgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcata |
203 |
Q |
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| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45274510 |
cagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcata |
45274609 |
T |
|
| Q |
204 |
gacaccggccttaacgtagataacatatctgcctttg |
240 |
Q |
| |
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|||||| |||||||||||||||| ||| ||||||||| |
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| T |
45274610 |
gacaccagccttaacgtagataaaatacctgcctttg |
45274646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 45294036 - 45294275
Alignment:
| Q |
1 |
tcattcataaggtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| ||| | | | | ||| || |
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| T |
45294036 |
tcattcataaggtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacac |
45294135 |
T |
|
| Q |
101 |
cggcgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtc |
200 |
Q |
| |
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| || |||||| || || || |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| || |
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| T |
45294136 |
cagcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatc |
45294235 |
T |
|
| Q |
201 |
atagacaccggccttaacgtagataacatatctgcctttg |
240 |
Q |
| |
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|||||| || ||||||||||||||| ||||||||||||| |
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| T |
45294236 |
atagacgccagccttaacgtagatagtatatctgcctttg |
45294275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 45302996 - 45303235
Alignment:
| Q |
1 |
tcattcataaggtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| ||| | | | | ||| || |
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| T |
45302996 |
tcattcataaggtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacac |
45303095 |
T |
|
| Q |
101 |
cggcgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtc |
200 |
Q |
| |
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| || |||||| || || || |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| || |
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| T |
45303096 |
cagcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatc |
45303195 |
T |
|
| Q |
201 |
atagacaccggccttaacgtagataacatatctgcctttg |
240 |
Q |
| |
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|||||| || ||||||||||||||| ||||||||||||| |
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| T |
45303196 |
atagacgccagccttaacgtagatagtatatctgcctttg |
45303235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 45282649 - 45282723
Alignment:
| Q |
1 |
tcattcataaggtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagg |
76 |
Q |
| |
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||||||||||| || | |||||||||||||||||||||||| |||||||||| |||| ||||||| ||||| |||| |
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| T |
45282649 |
tcattcataag-taaataattaattaaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaagg |
45282723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
193 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
238 |
Q |
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||||||||||||||||| ||||| |||||||| |||||||| |||| |
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| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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