View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21169_low_23 (Length: 237)
Name: NF21169_low_23
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 52421853 - 52422060
Alignment:
| Q |
14 |
gaatattacaatgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52421853 |
gaatattacaatgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaag |
52421952 |
T |
|
| Q |
114 |
accacagtgagacgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttccacttcctcttttgtag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52421953 |
accacagtgagacgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttccacttcctcttttgtag |
52422052 |
T |
|
| Q |
214 |
gggagaat |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
52422053 |
gggagaat |
52422060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 14151237 - 14151043
Alignment:
| Q |
25 |
tgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgag |
124 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||| ||||||||||||| | ||||||||||| ||| |
|
|
| T |
14151237 |
tgaaaaaagtggagcaacaaccatcatcatcagtctacaaggaggattttgtgctccatgaaagcagtagttcacccactcataaaaagaccacaatgat |
14151138 |
T |
|
| Q |
125 |
acgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttccacttcctcttttgtaggggagaat |
221 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| ||| || |||||||||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
14151137 |
acgtacacgctccaagcgtccacgtcctgcaagcttcag--cccctcgttcaaccatgcaactcatttctccaatttcctcttttgtaggggagaat |
14151043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 14150437 - 14150625
Alignment:
| Q |
25 |
tgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgag |
124 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||| || ||||||||||||| |||| |
|
|
| T |
14150437 |
tgaaaaaagtggagcaacaaccatcatcatcggtcaacaaggaggattttgtgctccttgaaagcagtagttcacctgctcatgaaaagaccacaatgag |
14150536 |
T |
|
| Q |
125 |
acgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttccacttcctcttttgtag |
213 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||| | | || |||||||||||||| ||||||| ||| || ||| ||||||| |
|
|
| T |
14150537 |
acgtacacgcaccaagcgtccacatcttgcaaccttcagcccacctcgttcaaccatgcaacccatttctcccattttctcctttgtag |
14150625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 24482488 - 24482321
Alignment:
| Q |
25 |
tgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgag |
124 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||| | |||||| ||||||||||||| ||| |||||| ||| |||| |
|
|
| T |
24482488 |
tgaaaaaagtgaagcaacaaccatcatcatcggtcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagactacaatgag |
24482389 |
T |
|
| Q |
125 |
acgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttct |
194 |
Q |
| |
|
|||||||| ||||||||||||| ||| || ||||| ||||| || || |||||||||||||||||||||| |
|
|
| T |
24482388 |
acgtacacactccaagcgtccatgtcatg-aacctgcagcttcc-tcgttcaaccatgcaactcatttct |
24482321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University