View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21169_low_8 (Length: 393)
Name: NF21169_low_8
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_low_8 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 45274015 - 45274389
Alignment:
| Q |
20 |
ttggatcaaggtagcagatgttccaaagatgaagtcaatggt-accggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtc |
118 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| ||| ||| |||| || ||| ||||||||| | ||||||||| ||||||| ||||| |||| |
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| T |
45274015 |
ttggatcaaggtagcagatgatccaaagatgaagtcaacggttaccagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtc |
45274114 |
T |
|
| Q |
119 |
ttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaat |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45274115 |
ttggtaacccacgatatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaat |
45274214 |
T |
|
| Q |
219 |
gtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaatttcaatcacactggctatatatgtcaatgtt |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45274215 |
gtcattgcctttccaatgaaccctattgcggtgttggctgcacgcatggataatcaattaattagtaatttcgatcacactggctatatatgtcaatgtt |
45274314 |
T |
|
| Q |
319 |
atatgtatatatttctcttttcaatgtgagttatgttttcttcaaaaataaattttgagagtgatgctacttttt |
393 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274315 |
atatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaataaattttgagagtgatgctacttttt |
45274389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 45270487 - 45270856
Alignment:
| Q |
18 |
ctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgt |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270487 |
ctttggatcaaggtggcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgt |
45270586 |
T |
|
| Q |
118 |
cttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaa |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
45270587 |
cttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatgccacagcttgcataccggcaggaccggctgtgttctcaaa |
45270686 |
T |
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| Q |
218 |
tgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaatttcaatcacactggctatatatgtcaatgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |||||||||| | ||| |
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| T |
45270687 |
tgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttctataacaccggctatatatatgtatg- |
45270785 |
T |
|
| Q |
318 |
tatatgtatatatttctcttttcaatgtgagtt-atgttttcttcaaaaataaattttgagagtgatgctact |
389 |
Q |
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| | ||||||| | ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |
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| T |
45270786 |
--tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctact |
45270856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 45282259 - 45282632
Alignment:
| Q |
20 |
ttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtct |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||| |||| || ||| ||||||||| | || |||||| ||||||| ||||| ||||| |
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| T |
45282259 |
ttggatcaaggtagcagatgatccaaagatgaagtcaacggtacccgagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtct |
45282358 |
T |
|
| Q |
120 |
tggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatg |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45282359 |
tggtaacccacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatg |
45282458 |
T |
|
| Q |
220 |
tcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaatttcaatcacactggctatatatgtcaatgtta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
45282459 |
tcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgtta |
45282558 |
T |
|
| Q |
320 |
tatgtatatatttctcttttcaatgtgagttatgttttcttcaaaaataaattttgagagtgatgctacttttt |
393 |
Q |
| |
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||||| ||| | | |||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
45282559 |
tatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccacttttt |
45282632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 45293599 - 45293904
Alignment:
| Q |
20 |
ttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtct |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45293599 |
ttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtct |
45293698 |
T |
|
| Q |
120 |
tggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatg |
219 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293699 |
tggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatg |
45293798 |
T |
|
| Q |
220 |
tcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaatttcaatcacactggc---tatatatgtcaatg |
316 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| |||||||| |
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| T |
45293799 |
tcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatg |
45293898 |
T |
|
| Q |
317 |
ttatat |
322 |
Q |
| |
|
|||||| |
|
|
| T |
45293899 |
ttatat |
45293904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 45302559 - 45302864
Alignment:
| Q |
20 |
ttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtct |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302559 |
ttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtct |
45302658 |
T |
|
| Q |
120 |
tggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatg |
219 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302659 |
tggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatg |
45302758 |
T |
|
| Q |
220 |
tcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaatttcaatcacactggc---tatatatgtcaatg |
316 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| |||||||| |
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|
| T |
45302759 |
tcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatg |
45302858 |
T |
|
| Q |
317 |
ttatat |
322 |
Q |
| |
|
|||||| |
|
|
| T |
45302859 |
ttatat |
45302864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 45293958 - 45294013
Alignment:
| Q |
334 |
tcttttcaatgtgagttatgttttcttcaaaaataaattttgagagtgatgctact |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
45293958 |
tcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttact |
45294013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 45302918 - 45302973
Alignment:
| Q |
334 |
tcttttcaatgtgagttatgttttcttcaaaaataaattttgagagtgatgctact |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
45302918 |
tcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttact |
45302973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 38587600 - 38587643
Alignment:
| Q |
147 |
aaagcagacatatctccttggtttctaaatgccacagcttggtg |
190 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
38587600 |
aaagcagacatgtctccttggtttctaaatgccactgcttggtg |
38587643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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