View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21169_low_9 (Length: 382)
Name: NF21169_low_9
Description: NF21169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21169_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 4 - 367
Target Start/End: Complemental strand, 6952664 - 6952301
Alignment:
| Q |
4 |
aagataaaataactttcnnnnnnnaagtgagaaattaaaccaaataacttgaagataaatagtttcatttcttttgaaacttataataatatcagtttaa |
103 |
Q |
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| T |
6952664 |
aagataaaataactttctttttttaagtgagaaattaaaccaaataacttgaagataaatagtttcatttcttttgaaacttataataatatcagtttaa |
6952565 |
T |
|
| Q |
104 |
atatcaatctccataaaaacttagacaaatgaagaagctaataatttcttaatgaaagcagtaatcattaattaattataagcagagtgnnnnnnnnnnn |
203 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6952564 |
atatcaatctccataaaaacttagacagatgaagaagctaataatttcttaatgaaagcagtaatcattaattaattataagcagagtgataaaatataa |
6952465 |
T |
|
| Q |
204 |
nnnnnnnnnnnttattgagtactactctttatgggtttgcttttacgcctagctctgctgcttctacaagacacagacacagacacaccctttggaacaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6952464 |
aaataaaaatattattgagtactactctttatgggtttgcttttacgcctagctctgctgcttctacaagacacagacacagacacaccttttggaacaa |
6952365 |
T |
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| Q |
304 |
gttgaatctcttgttcacctccctcttcttttctaaccatgcatgcttctacttctgatgatgt |
367 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6952364 |
gttgaatctcttgttcacctccctcttcttttctaaccatgcatgcttctacttctgatgatgt |
6952301 |
T |
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