View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2116_high_1 (Length: 477)
Name: NF2116_high_1
Description: NF2116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2116_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 34688250 - 34687996
Alignment:
| Q |
18 |
caaatcaaaaacaatattgataaatgaagagactacaaaaacaagatatagcaactagaaagctggcccatcaaggtgcaacttttcaacaaagtcaaca |
117 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688250 |
caaatcagaaacaatattgataaatgaagagactacaaaaacaagatatagcaactagaaagctggcccatcaaggtgcaacttttcaacaaagtcaaca |
34688151 |
T |
|
| Q |
118 |
caagaaagcatataaatgtatgcaaccaaacaagacaaacagaattgtggttacagtaacaattgagaaacagaaatcaagtacatataccaaaaagcga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688150 |
caagaaagcatataaatgtatgcaaccaaacaagacaaacagaattgtggttacagtaacaattgagaaacagaaatcaagtacatataccaaaaagcga |
34688051 |
T |
|
| Q |
218 |
taagtcatcaaagaaggaactgcatgatgctatacaatgtctctgcaagggatgt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34688050 |
taagtcatcaaagaaggaactgcatgatgctatacaatgtctcggcaagggatgt |
34687996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 272 - 461
Target Start/End: Complemental strand, 34687961 - 34687772
Alignment:
| Q |
272 |
tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34687961 |
tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta |
34687862 |
T |
|
| Q |
372 |
attcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaatttta |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34687861 |
attcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaatttta |
34687772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 26986192 - 26985937
Alignment:
| Q |
18 |
caaatcaaaaacaatattgataaatgaagagactacaaaaacaagatatagcaactagaaagctggcccatcaaggtgcaacttttcaacaaagtcaaca |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26986192 |
caaatcagaaacaatattgataaatgaagagactacaaaaacaagatatagcaactagaaagctggcccatcaaggtgcaacttttcaacaaagtcaaca |
26986093 |
T |
|
| Q |
118 |
caagaaagcatataaatgtatgcaaccaaacaagacaaacagaattgtggttacagtaacaattgagaaacagaaatcaa-gtacatataccaaaaagcg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
26986092 |
caagaaagcatataaatgtatgcaaccaaacaagacaaacagaattgtggttacagtaacaattgagaaacagaaatcaaggtacatataccaaaaagcg |
26985993 |
T |
|
| Q |
217 |
ataagtcatcaaagaaggaactgcatgatgctatacaatgtctctgcaagggatgt |
272 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
26985992 |
attagtcatcaaagaaggaactgcatgatgctatacaatgtctcggcaagggatgt |
26985937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 272 - 457
Target Start/End: Complemental strand, 26985902 - 26985717
Alignment:
| Q |
272 |
tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26985902 |
tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta |
26985803 |
T |
|
| Q |
372 |
attcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaat |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
26985802 |
attcatgggataaactatcagatgaaattcaatattaattcaaagtagtttcaatgaatatgaggaatttcaatgagaagaggaat |
26985717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 45 - 272
Target Start/End: Original strand, 27079197 - 27079434
Alignment:
| Q |
45 |
agagactacaaaaacaagatatagcaactagaaagctggcccatcaaggtgcaacttttcaacaaagtcaacacaagaaagcatataaatgtatgcaacc |
144 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
27079197 |
agagacaacaaaaacaagatatagcaactagaaaactggcccatcaaggtgcaacctttcaacaaaatcaacacaagaaagcttataaatgtatgcaacc |
27079296 |
T |
|
| Q |
145 |
aaacaagacaaacagaattgtggttac---------agtaacaattgagaaacagaaatcaa-gtacatataccaaaaagcgataagtcatcaaagaagg |
234 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||| |||| ||||||||||||||| |
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|
| T |
27079297 |
aaacaagacaaaaagaattgtggttactgctgtgttagtaacaattgacaaacagatatcaaggtacatataccaaaaatcgatcagtcatcaaagaagg |
27079396 |
T |
|
| Q |
235 |
aactgcatgatgctatacaatgtctctgcaagggatgt |
272 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||| |
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|
| T |
27079397 |
aacttcatgatgctatacaatgtcttggcgagggatgt |
27079434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 27025990 - 27025845
Alignment:
| Q |
26 |
aaacaatattgataaatgaagagactacaaaaacaagatatagcaactagaaagctggcccatcaaggtgcaacttttcaacaaagtcaacacaagaaag |
125 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
27025990 |
aaacaatatcgataaatgaagagactacaaaaacaagatatagcaactagaaagctggcccatcaaggtgcaacctctcaacaaagtcaacacaagaaag |
27025891 |
T |
|
| Q |
126 |
catataaatgtatgcaaccaaacaagacaaacagaattgtggttac |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27025890 |
catataaatgtatgcaaccaaacaagacaaacagaattgtggttac |
27025845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 27079470 - 27079625
Alignment:
| Q |
274 |
taagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaat |
373 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
27079470 |
taagtcccaaatcaaatgaaattactgggtgaagtacctaagttgttagattctttggaattaatcgtagttggcaaacatacatccaactttaattaat |
27079569 |
T |
|
| Q |
374 |
tcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaa |
429 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27079570 |
tcatgggataaactatcaaatgaaattcaatattaattcaaagtactttcaatgaa |
27079625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 269 - 408
Target Start/End: Complemental strand, 27025740 - 27025601
Alignment:
| Q |
269 |
atgtttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaa |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| | |||||||| |
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|
| T |
27025740 |
atgtgtaagtcccaaatcagatgaaattactcggtgaagcacctaagttgttagattcgttggaattaatcgtagttggctaacatacagccaactttaa |
27025641 |
T |
|
| Q |
369 |
ttaattcatgggataaactatcagatgaaattcaatatta |
408 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
27025640 |
ttaattcatgggctaaactgtcaaatgaaattcaatatta |
27025601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 27025819 - 27025771
Alignment:
| Q |
224 |
atcaaagaaggaactgcatgatgctatacaatgtctctgcaagggatgt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27025819 |
atcaaagaaggaactgcatgatgctatacaatgtctcggcaagggatgt |
27025771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 55 - 254
Target Start/End: Complemental strand, 30230803 - 30230600
Alignment:
| Q |
55 |
aaaacaagatatagcaactagaaagctggcccatcaaggtgcaacttttcaacaaagtcaacacaagaaagcatataaatgtatgcaaccaaacaagaca |
154 |
Q |
| |
|
|||||||| |||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30230803 |
aaaacaaggtatatcaactagaaagcaggtccatcaaggtgcaacttttcaacaaaatcaacacaagaaagc--ataaatgtatgcaaccaaacaagaca |
30230706 |
T |
|
| Q |
155 |
aacagaattgtggttac-----agtaacaattgagaaacagaaatcaa-gtacatataccaaaaagcgataagtcatcaaagaaggaactgcatgatgct |
248 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||| ||||||||| |||||||||||||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
30230705 |
aacagaattgtggttactgctgtgtaacaactgacaaatagaaatcaaggtacatataccaaagagtgaccagtcatcaaagaaggaactgcatgatgct |
30230606 |
T |
|
| Q |
249 |
atacaa |
254 |
Q |
| |
|
|||||| |
|
|
| T |
30230605 |
atacaa |
30230600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 367 - 461
Target Start/End: Complemental strand, 30228291 - 30228197
Alignment:
| Q |
367 |
aattaattcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaatttta |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
30228291 |
aattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaatttta |
30228197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 30228557 - 30228477
Alignment:
| Q |
54 |
aaaaacaagatatagcaactagaaagctggcccatcaaggtgcaacttttcaacaaagtcaacacaagaaagcatataaat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
30228557 |
aaaaacaagatatagcaactagaaagctggcccatcaaggtgtaacctttcagcaaagtcaacacaagaaagcatataaat |
30228477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 30228475 - 30228414
Alignment:
| Q |
199 |
tacatataccaaaaagcgataagtcatcaaagaaggaactgcatgatgctatacaatgtctc |
260 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30228475 |
tacatataccaaaaagcgatcagtcatcaaagaaggaactgcatgatgctatacaatatctc |
30228414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 30228365 - 30228304
Alignment:
| Q |
272 |
tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaa |
333 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
30228365 |
tttaaatcccaaatcagatgaaattactcggtgaagcacctgagttgttagattctttggaa |
30228304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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