View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2116_high_10 (Length: 237)
Name: NF2116_high_10
Description: NF2116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2116_high_10 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 24090995 - 24090932
Alignment:
| Q |
55 |
ggaggaggattgcagggacttagactccagcttgcacttcttgaccgaaattttaatgagatag |
118 |
Q |
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| T |
24090995 |
ggaggaagattgcagggacttagactccagcttgcacttcttgaccgaaattttaatgagatag |
24090932 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 24086933 - 24086870
Alignment:
| Q |
55 |
ggaggaggattgcagggacttagactccagcttgcacttcttgaccgaaattttaatgagatag |
118 |
Q |
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| T |
24086933 |
ggaggaagattgcagggacttagactccagcttgcacttcttgaccgagattttaatgagatag |
24086870 |
T |
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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 36284015 - 36283919
Alignment:
| Q |
115 |
atagatccatatctagttggaaattgcttactaaaagtactaatttgatggaatttaattgaatattattatcacaatcagcttgcacaataattcaggt |
214 |
Q |
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| T |
36284015 |
atagatccatatctagttggaaattgcttactaaaagtgctaatttg----------aataaatattattatcacaatcagcctgcacaataattcaggt |
36283926 |
T |
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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40572109 - 40572058
Alignment:
| Q |
1 |
aatccagcttcgacgatcgatttgtccaatcacgaggctattgatactccag |
52 |
Q |
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| T |
40572109 |
aatccagcttcgacgatcaatttgtccaatcacgaggctattgatactccag |
40572058 |
T |
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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19913615 - 19913564
Alignment:
| Q |
1 |
aatccagcttcgacgatcgatttgtccaatcacgaggctattgatactccag |
52 |
Q |
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| T |
19913615 |
aatccagcttcgacgatcaatttgtccaatcacgaggctattgatactccag |
19913564 |
T |
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Target: scaffold0130 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18808 - 18757
Alignment:
| Q |
1 |
aatccagcttcgacgatcgatttgtccaatcacgaggctattgatactccag |
52 |
Q |
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| T |
18808 |
aatccagcttcgatgatcgatttgtccaaacacgaggctattgatactccag |
18757 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10776679 - 10776629
Alignment:
| Q |
1 |
aatccagcttcgacgatcgatttgtccaatcacgaggctattgatactcca |
51 |
Q |
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| T |
10776679 |
aatccagcttcgaagatcaatttgtccaatcacgaggctattgatactcca |
10776629 |
T |
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