View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2116_high_11 (Length: 237)
Name: NF2116_high_11
Description: NF2116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2116_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33194017 - 33194255
Alignment:
| Q |
1 |
ttattctcccttagtttttgggggttcttaaagcttgtgactacgttgcaggacttccactcacttgtttcacattgctttgttaagcttggtttagcat |
100 |
Q |
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| T |
33194017 |
ttattctcccttagtttttgggggttcttaaagcttgtgactacgttgcaggacttccactcacttgtttcacattgctttgttaagcttggtttagcat |
33194116 |
T |
|
| Q |
101 |
ttc------------ttaattggtatgttttctccatctcttgcattt-----tagtttctatcttttctcaagttttatgtggttggatctatacgtgt |
183 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33194117 |
ttccctctacatttcttaattggtatgttttctccatctcttgcattttattttagtttctatcttttctcaagttttatgtggttggatctatacgtgt |
33194216 |
T |
|
| Q |
184 |
tgctctttgcatcaggatcttagtatataacttctcatt |
222 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |
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| T |
33194217 |
tgctctttgcatcaggatcttagtacataacttctcatt |
33194255 |
T |
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