View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2116_high_4 (Length: 315)
Name: NF2116_high_4
Description: NF2116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2116_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 36718577 - 36718377
Alignment:
| Q |
2 |
atatcatatttggatcatttggtcaatgttatgttttttgcttccttttattcttcagtagctatttttccattttgtgaaaaattgttgacaggaaata |
101 |
Q |
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| T |
36718577 |
atatcatatttggatcatttggttaatgttatgttttttgcttccttttattcttcagtagctatttttccattttgtgaaaaattgttgacaggaaata |
36718478 |
T |
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| Q |
102 |
gaataaggtaggacaaagttagagaaagtaagagagacttaggttgatgttgtaattttgtaatccccttgttataggctaataataaatgtgggatatg |
201 |
Q |
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| T |
36718477 |
gaataaggtaggacaaagttagagaaagtaagagagacttacgttgatgttgtaattttgtaatccccttgttataggctaataataaatgtgggatatg |
36718378 |
T |
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| Q |
202 |
a |
202 |
Q |
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| T |
36718377 |
a |
36718377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 36718328 - 36718289
Alignment:
| Q |
251 |
aggtgatgaatgcgtctaattgaatggatttcattggttga |
291 |
Q |
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| T |
36718328 |
aggtgatga-tgcgtctaattgaatggattttattggttga |
36718289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 35414049 - 35414204
Alignment:
| Q |
2 |
atatcatatttggatcatttggtcaatgttatgttttttgcttccttttattcttcagtagctatttttccattttgtgaaaaattgttgacaggaaata |
101 |
Q |
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| T |
35414049 |
atatcatatttggatcatttggttaatattatgttttttgcttccttttattctt-agtagctatttttccatcttgtgaaacattgttgataggaaaca |
35414147 |
T |
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| Q |
102 |
gaataaggtaggacaaagttagagaaagtaagagagacttaggttgatgttgtaatt |
158 |
Q |
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| T |
35414148 |
gaaaaaggtaggataaagttagagaaagtaagagagacttaggttgatgttgtaatt |
35414204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 27178690 - 27178640
Alignment:
| Q |
150 |
gttgtaattttgtaatccccttgttataggctaataataaatgtgggatat |
200 |
Q |
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| T |
27178690 |
gttgtaattttgtaatcccctagttttaggctaataataaatgtgggatat |
27178640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 13618686 - 13618607
Alignment:
| Q |
12 |
tggatcatttggtcaatgttatgttttttgcttccttttattcttcagtagctatttttccattttgtgaaaaattgttg |
91 |
Q |
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| T |
13618686 |
tggatcatttggttaatatttttatttatacttccttttattcttccctagctatttttccattttgtgaagaattgttg |
13618607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 49250623 - 49250682
Alignment:
| Q |
106 |
aaggtaggacaaagttagagaaagtaagagagacttaggttgatgttgtaattttgtaat |
165 |
Q |
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| T |
49250623 |
aaggtaggagaaggttagggacagcgagagagacttaggttgttgttgtaattttgtaat |
49250682 |
T |
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