View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2116_high_7 (Length: 249)

Name: NF2116_high_7
Description: NF2116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2116_high_7
NF2116_high_7
[»] chr7 (2 HSPs)
chr7 (110-221)||(19808684-19808795)
chr7 (1-80)||(19808513-19808590)
[»] chr1 (1 HSPs)
chr1 (1-85)||(15156853-15156938)
[»] chr8 (2 HSPs)
chr8 (12-85)||(25549303-25549376)
chr8 (12-85)||(25555600-25555673)
[»] chr6 (1 HSPs)
chr6 (12-85)||(22621269-22621342)
[»] chr3 (1 HSPs)
chr3 (12-85)||(20011156-20011229)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 19808684 - 19808795
Alignment:
Q  110 tacaagtctgtgattgtatatttatctctgattagggaacctttccccagagaatattcaataataaacaataatattcagtcatttatcctattggtat 209  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||     
T  19808684 tacaagtgtgtgattgtatatttatctctgattaggaaacctttccccagagaatattcaataataaacaataatattcagttgtttatcctattggtac 19808783  T
Q  210 cagtttctatca 221  Q
    ||||||||||||    
T  19808784 cagtttctatca 19808795  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 19808590 - 19808513
Alignment:
Q  1 tctaagataactattaaatatgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaata 80  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  19808590 tctaagataactattaagtctgactattctttatttatataacagaata--cacattctagaaaataactgcacacaata 19808513  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15156853 - 15156938
Alignment:
Q  1 tctaagataactattaaatatgacttttctttatttatataacagaatacacacattc-tagaaaataactgcacacaatataatt 85  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  15156853 tctaagataactattaagtctgacttttctttatttatataacagaatacacacattcttagaaaataacagcacacaatataatt 15156938  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 25549376 - 25549303
Alignment:
Q  12 tattaaatatgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaatataatt 85  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  25549376 tattaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaatataatt 25549303  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 25555673 - 25555600
Alignment:
Q  12 tattaaatatgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaatataatt 85  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  25555673 tattaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaatataatt 25555600  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 22621269 - 22621342
Alignment:
Q  12 tattaaatatgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaatataatt 85  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  22621269 tattaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaatataatt 22621342  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 20011156 - 20011229
Alignment:
Q  12 tattaaatatgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaatataatt 85  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  20011156 tattaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaatataatt 20011229  T

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