View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2116_low_2 (Length: 462)
Name: NF2116_low_2
Description: NF2116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2116_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 262 - 454
Target Start/End: Complemental strand, 25907525 - 25907333
Alignment:
| Q |
262 |
aatgacatgaataaataaaattaaaacaagttgaacaaattgaatcaaaataaaagtaaagagtgagaatatgattatctcaagggttttccgaacaatt |
361 |
Q |
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| T |
25907525 |
aatgacatgaataaataaaattaaaacaagttgaacaaattgaatcaaaataaaagtaaagagtgagaatatgattatctcaagggttttccgaacaatt |
25907426 |
T |
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| Q |
362 |
tttggtctcttattcggtttctttggtggcttctgaccagtgaagagcatgaaatcatgttcaatctgtaagactcaacttcaccttcatcct |
454 |
Q |
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| T |
25907425 |
tttggtctcttattcggtttttttggtggcttctgaccagtgaagagcatgaaatcatgttcaatctgtaagactcaacttcaccttcatcct |
25907333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 25907786 - 25907609
Alignment:
| Q |
1 |
catctcccggcttcccgtcaggtgcgttagcaagttcaacaaaacccttatttcattcaaatgcatctcaataaatcagcctgaaacccacatctattac |
100 |
Q |
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| T |
25907786 |
catctcccggcttcccgttaggtgcgttagcaagttcaacaaaacccttatttcattcaaatgcatctcaataaatcagcatgaaacccacatctattac |
25907687 |
T |
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| Q |
101 |
taaagaagcaagacgatcccagctgtaaggattgtaaagccgaacatttcgccgtttctagtttactccaaaacaagc |
178 |
Q |
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| T |
25907686 |
taaagaagcaagacgatcccagctgtgaggattgtaaagccgaacatttcgccgtttctagtttactccaaaacaagc |
25907609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 264 - 376
Target Start/End: Complemental strand, 25890041 - 25889929
Alignment:
| Q |
264 |
tgacatgaataaataaaattaaaacaagttgaacaaattgaatcaaaataaaagtaaagagtgagaatatgattatctcaagggttttccgaacaatttt |
363 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
25890041 |
tgacatgaataagtaaaattaaaacaagttgaaaaaattgaatcaaagtaaaagtaaagagtgagaatatgattacctcaagggttttctgaacaatttt |
25889942 |
T |
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| Q |
364 |
tggtctcttattc |
376 |
Q |
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||||||||||||| |
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| T |
25889941 |
tggtctcttattc |
25889929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 25890255 - 25890121
Alignment:
| Q |
44 |
acccttatttcattcaaatgcatctcaataaatcagcctgaaacccacatctattactaaagaagcaagacgatcccagctgtaaggattgtaaagccg- |
142 |
Q |
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|||||||||||||||||||| |||||||||||||| | |||||||||||||||||| ||| ||||||| || |||||| |||||||||||||||||| |
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| T |
25890255 |
acccttatttcattcaaatgaatctcaataaatcaacatgaaacccacatctatta-taatgaagcaatacaatcccaatggtaaggattgtaaagccga |
25890157 |
T |
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| Q |
143 |
aacatttcgccgtttctagtttactccaaaacaagc |
178 |
Q |
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|| || ||||| |||||||||||||||||||||||| |
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| T |
25890156 |
aatatatcgccatttctagtttactccaaaacaagc |
25890121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 428
Target Start/End: Complemental strand, 98870 - 98766
Alignment:
| Q |
324 |
gtgagaatatgattatctcaagggttttccgaacaatttttggtctcttattcggtttctttggtggcttctgaccagtgaagagcatgaaatcatgttc |
423 |
Q |
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||||||||||||||| ||||| | |||| |||| || ||| ||||||| ||||||||||||| |||||||||||||| | ||| | |||||||||||| |
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| T |
98870 |
gtgagaatatgattacctcaacagatttctgaacctttgttgatctcttaatcggtttctttggcggcttctgaccagtcatgagtaagaaatcatgttc |
98771 |
T |
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| Q |
424 |
aatct |
428 |
Q |
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|||| |
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| T |
98770 |
gatct |
98766 |
T |
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