View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2116_low_4 (Length: 335)

Name: NF2116_low_4
Description: NF2116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2116_low_4
NF2116_low_4
[»] chr2 (11 HSPs)
chr2 (1-188)||(43564267-43564455)
chr2 (203-322)||(29455285-29455407)
chr2 (105-188)||(29455477-29455560)
chr2 (1-138)||(41646520-41646660)
chr2 (84-138)||(7573990-7574044)
chr2 (84-138)||(16668585-16668639)
chr2 (2-72)||(29455575-29455647)
chr2 (203-248)||(43564151-43564196)
chr2 (148-188)||(7574085-7574125)
chr2 (148-188)||(41646702-41646742)
chr2 (148-188)||(16668680-16668720)
[»] chr4 (17 HSPs)
chr4 (1-138)||(5430898-5431035)
chr4 (1-138)||(53830318-53830458)
chr4 (1-138)||(2500459-2500600)
chr4 (1-138)||(34737611-34737755)
chr4 (1-138)||(46092492-46092634)
chr4 (84-138)||(2504900-2504954)
chr4 (84-138)||(46135017-46135071)
chr4 (148-188)||(2504995-2505035)
chr4 (1-138)||(21632589-21632724)
chr4 (148-188)||(46092411-46092451)
chr4 (148-188)||(46134936-46134976)
chr4 (148-188)||(53830499-53830539)
chr4 (148-188)||(20036391-20036431)
chr4 (148-188)||(34737793-34737833)
chr4 (148-188)||(5430821-5430861)
chr4 (86-138)||(21803082-21803133)
chr4 (148-188)||(2500638-2500678)
[»] chr3 (7 HSPs)
chr3 (1-138)||(26215499-26215637)
chr3 (1-138)||(35870532-35870670)
chr3 (1-138)||(48266453-48266589)
chr3 (84-138)||(52349915-52349969)
chr3 (148-188)||(35870451-35870491)
chr3 (148-188)||(48266372-48266412)
chr3 (148-188)||(52349834-52349874)
[»] chr8 (10 HSPs)
chr8 (1-138)||(11427962-11428099)
chr8 (1-138)||(20172141-20172281)
chr8 (1-188)||(918803-918989)
chr8 (1-136)||(10186542-10186678)
chr8 (1-138)||(4138504-4138641)
chr8 (148-188)||(8150485-8150525)
chr8 (148-188)||(10186462-10186502)
chr8 (148-188)||(11428136-11428176)
chr8 (207-240)||(919075-919108)
chr8 (148-184)||(20172070-20172106)
[»] chr7 (9 HSPs)
chr7 (1-138)||(44393851-44393992)
chr7 (1-137)||(47233635-47233774)
chr7 (84-138)||(5767963-5768017)
chr7 (84-138)||(25419474-25419528)
chr7 (148-188)||(5768058-5768098)
chr7 (148-188)||(25419569-25419609)
chr7 (148-188)||(39066864-39066904)
chr7 (148-188)||(47233816-47233856)
chr7 (148-184)||(44393780-44393816)
[»] chr1 (9 HSPs)
chr1 (1-138)||(22912346-22912484)
chr1 (84-138)||(13786418-13786472)
chr1 (84-138)||(25807670-25807724)
chr1 (1-131)||(39623648-39623778)
chr1 (1-125)||(23725859-23725986)
chr1 (148-188)||(13786337-13786377)
chr1 (148-188)||(22912522-22912562)
chr1 (148-188)||(25807766-25807806)
chr1 (148-188)||(23726019-23726058)
[»] chr6 (6 HSPs)
chr6 (1-138)||(16711926-16712067)
chr6 (84-138)||(13433352-13433406)
chr6 (148-188)||(13433447-13433487)
chr6 (1-131)||(18882819-18882947)
chr6 (148-188)||(16712103-16712143)
chr6 (86-131)||(26721029-26721074)
[»] chr5 (6 HSPs)
chr5 (1-131)||(37301718-37301853)
chr5 (1-129)||(21604884-21605013)
chr5 (1-138)||(36991232-36991376)
chr5 (148-188)||(36991151-36991191)
chr5 (148-188)||(21605061-21605101)
chr5 (152-188)||(37301986-37302022)
[»] scaffold0516 (2 HSPs)
scaffold0516 (148-188)||(3355-3395)
scaffold0516 (1-125)||(3430-3555)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 43564455 - 43564267
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||| ||| ||||||||||||| ||||||||| ||        |||||||||||||||    
T  43564455 atatccattagagaatacgaaaaattatagaaatagaaacacacacacacaaagcttgaagagaaaatcaaaactatcgaaaaa-tgaaatggaagaaga 43564357  T
Q  99 aatgagaaggataacataagcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    ||||| ||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||    
T  43564356 aatgaaaaggataacataagcaacatatatataagcttagaaaaaaatgaaaaggattgattaagaatatgaataattttaaaatgtaac 43564267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 29455407 - 29455285
Alignment:
Q  203 catataataagtgttgtcaattattaatcaaaaattaaggaaatgannnnnnn-gggttgtaaatgggagttacaaatgtcagccgc--acatgtatttg 299  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  |||||||||||    
T  29455407 catataataagtgttatcaattattaatcaaaaattaaggaaatgattttttttgggttgtaaatgggagttacaaatgtcagccgcatacatgtatttg 29455308  T
Q  300 taattatgtgtaactgacaatat 322  Q
    ||  |||||||||||||||||||    
T  29455307 tatatatgtgtaactgacaatat 29455285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 29455560 - 29455477
Alignment:
Q  105 aaggataacataagcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||    
T  29455560 aaggataacataagcaacatatatataagcttagaaaaaaatgaagaggattaattaagaatatgaataattttaaaatgtaac 29455477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 41646520 - 41646660
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacg--aagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaa 96  Q
    |||||||||||| ||||| ||||||||||||  ||||||||||||| |||   ||||||||||||| ||||||||| ||        |||||||||||||    
T  41646520 atatccattagaaaatacgaaaaattatagaaatagaaacacacacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaagaa 41646618  T
Q  97 gaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||| ||||| ||||||||||||||||||||||||||||    
T  41646619 gaaatgaaaaggacaacataagcaacatatatataagcttag 41646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 7573990 - 7574044
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7573990 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 7574044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 16668585 - 16668639
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16668585 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 16668639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 29455647 - 29455575
Alignment:
Q  2 tatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaac 72  Q
    ||||||||||||||||| ||||||||||||  ||||||| ||||| ||| ||||||||||||| |||||||||    
T  29455647 tatccattagagaatacgaaaaattatagaaatagaaacgcacacacacaaagcttgaagagaaaatcaaaac 29455575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 43564196 - 43564151
Alignment:
Q  203 catataataagtgttgtcaattattaatcaaaaattaaggaaatga 248  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  43564196 catataataagtgttgtcaattattaatcaaaaattaaggtaatga 43564151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 7574085 - 7574125
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7574085 aagaggattgattaagaatatgaataattttaaaatgtaac 7574125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 41646702 - 41646742
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41646702 aagaggattgattaagaatatgaataattttaaaatgtaac 41646742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 16668680 - 16668720
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  16668680 aagaggattgatcaagaatatgaataattttaaaatgtaac 16668720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 5431035 - 5430898
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        |||||||||||||||||    
T  5431035 atatccattagagaatacgaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaactataaaaaaaatgaaatggaagaagaaa 5430936  T
Q  101 tgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  5430935 tgagaagaataacataagcaacatatatatgagcttag 5430898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 53830318 - 53830458
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacact--cacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaa 96  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||    ||| ||||||||||||| ||||||||| ||        |||||||||||||    
T  53830318 atatccattagagaatacgaaaaattatagaaatagaaacacacataaacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaagaa 53830416  T
Q  97 gaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  53830417 gaaatgaaaaggataacataagcaacatatatataagcttag 53830458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 2500459 - 2500600
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaa--cacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaa 96  Q
    |||||||||||||||||  ||||||||||||  ||||||  ||||||| ||||||||||||||||| |||||||||  |        |||||||||||||    
T  2500459 atatccattagagaatatgaaaaattatagaaatagaaaaacacacacacacgaagcttgaagagaaaatcaaaactgtaaaaaaaatgaaatggaagaa 2500558  T
Q  97 gaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||| |||||||| ||||||||||||||| |||||||||    
T  2500559 gaaatgaaaaggataatataagcaacatatatgtaagcttag 2500600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 34737611 - 34737755
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaac------acacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatgga 92  Q
    |||||||||||||||||| ||||||||||||  ||||| |      |||||| ||| ||||||||||||| ||||||||| ||        |||||||||    
T  34737611 atatccattagagaatacgaaaaattatagaaatagaagcgcgcgcacacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatgga 34737709  T
Q  93 agaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  34737710 agaagaaatgaaaaggataacataagcaacatatatataagcttag 34737755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 46092634 - 46092492
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacg----aagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaag 94  Q
    ||||| |||||||||||| ||||||||||||  ||||||||||||| |||     |||||| |||||| ||||||||| ||        |||||||||||    
T  46092634 atatctattagagaatacgaaaaattatagaaatagaaacacacacacacacacaaagcttaaagagaaaatcaaaactatcaaaaaa-tgaaatggaag 46092536  T
Q  95 aagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  46092535 aagaaatgaaaaggataacataagcaacatatatataagcttag 46092492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 2504900 - 2504954
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2504900 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 2504954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 46135071 - 46135017
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46135071 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 46135017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 2504995 - 2505035
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2504995 aagaggattgattaagaatatgaataattttaaaatgtaac 2505035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 21632589 - 21632724
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    |||||||||||||||||| ||| |||||||| | | | ||| || ||| ||||||||||||| || |||||| ||        | |||||||||||||||    
T  21632589 atatccattagagaatacgaaatattatagaaatagaaacatacacacaaagcttgaagagaaaagcaaaactatcaaaaaa-taaaatggaagaagaaa 21632687  T
Q  101 tgagaaggataacataagcaacatatatataagcttag 138  Q
    ||| ||||||||||||||||||| ||| ||||||||||    
T  21632688 tgaaaaggataacataagcaacacata-ataagcttag 21632724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 46092451 - 46092411
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46092451 aagaggattgattaagaatatgaataattttaaaatgtaac 46092411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 46134976 - 46134936
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46134976 aagaggattgattaagaatatgaataattttaaaatgtaac 46134936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 53830499 - 53830539
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53830499 aagaggattgattaagaatatgaataattttaaaatgtaac 53830539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 20036431 - 20036391
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  20036431 aagaggattgattaagaatatgattaattttaaaatgtaac 20036391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 34737793 - 34737833
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  34737793 aagaggattgatcaagaatatgaataattttaaaatgtaac 34737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 5430861 - 5430821
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  5430861 aagatgattgactaagaatatgaataattttaaaatgtaac 5430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 21803133 - 21803082
Alignment:
Q  86 aaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||    
T  21803133 aaatggaagaagagatgaaaaggataacataagcaacacata-ataagcttag 21803082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 2500638 - 2500678
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||| |||||||  |||||||||||||||||||    
T  2500638 aagaggattgatcaagaatacaaataattttaaaatgtaac 2500678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 26215637 - 26215499
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccat-nnnnnnnntgaaatggaagaagaa 99  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||    
T  26215637 atatccattagagaatacgaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaactataaaaaaaaatgaaatggaagaagaa 26215538  T
Q  100 atgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  26215537 atgagaaggataacataagcaacatatatatgagcttag 26215499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35870670 - 35870532
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||||||||||||  |||||||| |||| ||| ||||||||||||| ||||||||| ||        |||||||||||||||    
T  35870670 atatccattagagaatacgaaaaattatagaaatagaaacatacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaagaaga 35870572  T
Q  99 aatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  35870571 aatgaaaaggataacataagcaacatatatataagtttag 35870532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 48266589 - 48266453
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    |||||||||||||||||  |||||||||||| | | | |||||| ||| ||||||||||||| ||||||||| ||        | |||||||||||||||    
T  48266589 atatccattagagaatatgaaaaattatagaaatagaaacacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-taaaatggaagaagaaa 48266491  T
Q  101 tgagaaggataacataagcaacatatatataagcttag 138  Q
    |||  |||||||||||||||||||||||||||||||||    
T  48266490 tgaagaggataacataagcaacatatatataagcttag 48266453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 52349969 - 52349915
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52349969 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 52349915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 35870491 - 35870451
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35870491 aagaggattgattaagaatatgaataattttaaaatgtaac 35870451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 48266412 - 48266372
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48266412 aagaggattgattaagaatatgaataattttaaaatgtaac 48266372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 52349874 - 52349834
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  52349874 aagaggattgattaagaatataaataattttaaaatgtaac 52349834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 11427962 - 11428099
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||        |||||||||||||||||    
T  11427962 atattcattagagaatacgaaaaattatagatagaaacacacactcacgaagcttgaagagaaaatcaaaactataaaaaaaatgaaatggaagaagaaa 11428061  T
Q  101 tgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||||||||||||| |||||||    
T  11428062 tgagaaggataacataagcaacatatatatgagcttag 11428099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 20172281 - 20172141
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccat---nnnnnnnntgaaatggaagaag 97  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||           ||||||||||||||    
T  20172281 atatccattagagaatacgaaaaattatagatagaaacacacactcacgaagtttgaagagagaatcaaaactataaaaaaaaaaatgaaatggaagaag 20172182  T
Q  98 aaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  20172181 aaatgagaaggataacataagcaacatatatatgagcttag 20172141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 918803 - 918989
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    |||||||||||||||||| |||||||||||| | | | | |||| ||| || |||||||||| ||||||||| ||        |||||||||||||||||    
T  918803 atatccattagagaatacgaaaaattatagaaatagaaatacacacactaaacttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaagaagaaa 918901  T
Q  101 tgagaaggataacataagcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    ||| |||||||||||| |||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  918902 tgaaaaggataacatatgcaatatatatataagcttagaaaaaaatgaagaggattgattaagaatatgaataattttaaaatgtaac 918989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 10186678 - 10186542
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||| ||||||||  ||||||||||||| ||| ||||||||||||| || |||||| ||        |||||||||||| ||    
T  10186678 atatccattagagaatacgaaatattatagaaatagaaacacacacacacaaagcttgaagagaaaagcaaaactatcaaaaaaatgaaatggaagagga 10186579  T
Q  99 aatgagaaggataacataagcaacatatatataagctt 136  Q
    ||||| ||||||||||||||||||| ||| ||||||||    
T  10186578 aatgaaaaggataacataagcaacacata-ataagctt 10186542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 4138641 - 4138504
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||| ||||||||  ||||||||||||| ||| | ||||||||||| || |||||| ||        |||||||||||||||    
T  4138641 atatccattagagaatacgaaatattatagaaatagaaacacacacacacaaggcttgaagagaaaagcaaaactatcaaaaaa-tgaaatggaagaaga 4138543  T
Q  99 aatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||| ||||||||||||||||||| ||| ||||||||||    
T  4138542 aatgaaaaggataacataagcaacacata-ataagcttag 4138504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 8150485 - 8150525
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  8150485 aagaggactgattaagaatatgaataattttaaaatgtaac 8150525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 10186502 - 10186462
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  10186502 aagaggattgattaagaatatgaacaattttaaaatgtaac 10186462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 11428136 - 11428176
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  11428136 aagatgattgactaagaatatgaataattttaaaatgtaac 11428176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 919075 - 919108
Alignment:
Q  207 taataagtgttgtcaattattaatcaaaaattaa 240  Q
    |||||||||||||||||||| |||||||||||||    
T  919075 taataagtgttgtcaattatcaatcaaaaattaa 919108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 20172106 - 20172070
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatg 184  Q
    |||| |||||| |||||||||||||||||||||||||    
T  20172106 aagatgattgactaagaatatgaataattttaaaatg 20172070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 44393992 - 44393851
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccat----nnnnnnnntgaaatggaagaa 96  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||            |||||||||||||    
T  44393992 atatccattagagaatacgaaaaattatagatagaaacacacactcacgaagtttgaagagagaatcaaaactataaaaaaaaaaaatgaaatggaagaa 44393893  T
Q  97 gaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  44393892 gaaatgagaaggataacataagcaacatatatatgagcttag 44393851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 47233635 - 47233774
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacg--aagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaa 96  Q
    |||||||||||||||||  |||| |||||||  ||||||||||||| |||   ||||||||||||| ||||||||| ||        |||||||||||||    
T  47233635 atatccattagagaatatgaaaagttatagaaatagaaacacacacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaagaa 47233733  T
Q  97 gaaatgagaaggataacataagcaacatatatataagctta 137  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  47233734 gaaatgaaaaggataatataagcaacatatatataagctta 47233774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 5767963 - 5768017
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5767963 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 5768017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 25419474 - 25419528
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25419474 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 25419528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 5768058 - 5768098
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5768058 aagaggattgattaagaatatgaataattttaaaatgtaac 5768098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 25419569 - 25419609
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25419569 aagaggattgattaagaatatgaataattttaaaatgtaac 25419609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 39066864 - 39066904
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39066864 aagaggattgattaagaatatgaataattttaaaatgtaac 39066904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 47233816 - 47233856
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47233816 aagaggattgattaagaatatgaataattttaaaatgtaac 47233856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 44393816 - 44393780
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatg 184  Q
    |||| |||||| |||||||||||||||||||||||||    
T  44393816 aagatgattgactaagaatatgaataattttaaaatg 44393780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 22912346 - 22912484
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||||||||||||  |||||||||| || ||| ||||||||||||| ||||||||| ||        | |||||||||||||    
T  22912346 atatccattagagaatacgaaaaattatagaaatagaaacacagacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-taaaatggaagaaga 22912444  T
Q  99 aatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  22912445 aatgaaaagaataacataagcaacatatatataagcttag 22912484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 13786472 - 13786418
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13786472 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 13786418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 25807670 - 25807724
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  25807670 tgaaatggaagaagaaatgaaaaggataacataagaaacatatatataagcttag 25807724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 39623778 - 39623648
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    ||||| ||| ||||||||  ||||||||||| | | | |||||| ||||||||||||| ||| ||||||||| ||        |||||||||||||||||    
T  39623778 atatctattcgagaatacggaaaattatagaaatagaaacacacacacgaagcttgaacagaaaatcaaaactatcaaaaaaatgaaatggaagaagaaa 39623679  T
Q  101 tgagaaggataacataagcaacatatatata 131  Q
    ||| |||||||| |||||||| |||||||||    
T  39623678 tgaaaaggataaaataagcaatatatatata 39623648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 23725859 - 23725986
Alignment:
Q  1 atatccattagagaatacaaaaaattatag--atagaaacacacactc--acgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaa 96  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| |  |||||||||||||| | ||||||||  ||        |||||||||||||    
T  23725859 atatccattagagaatacaaaaaattatagaaatagaaacacacacacaaacgaagcttgaagaaaaaatcaaaataat-aaaaaaatgaaatggaagaa 23725957  T
Q  97 gaaatgagaaggataacataagcaacata 125  Q
    ||||||| |||||| ||||||| ||||||    
T  23725958 gaaatgaaaaggatgacataagaaacata 23725986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 13786377 - 13786337
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13786377 aagaggattgattaagaatatgaataattttaaaatgtaac 13786337  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 22912522 - 22912562
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22912522 aagaggattgattaagaatatgaataattttaaaatgtaac 22912562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 25807766 - 25807806
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25807766 aagaggattgattaagaatatgaataattttaaaatgtaac 25807806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 23726019 - 23726058
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  23726019 aagaggattgattaagaatatgaataa-tttaaaatgtaac 23726058  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 16711926 - 16712067
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccat-----nnnnnnnntgaaatggaaga 95  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||              |||||||||||    
T  16711926 atatccatttgagaatacgaaaaattatagatagaaacacacactcacgaagcttgatgagaaaatcaaaactatcaacccaaaaagaagaaatggaaga 16712025  T
Q  96 agaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    || ||||| |||||||||||||||||||||||||| |||||||    
T  16712026 ag-aatgaaaaggataacataagcaacatatatatgagcttag 16712067  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 13433352 - 13433406
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13433352 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 13433406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 13433447 - 13433487
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13433447 aagaggattgattaagaatatgaataattttaaaatgtaac 13433487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 18882947 - 18882819
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    ||||| ||| ||||||||  |||||||||||  |||||||||||||    |||||||||| ||| ||||||||| ||        |||||||||||||||    
T  18882947 atatctattcgagaatacggaaaattatagaaatagaaacacacac----gaagcttgaacagaaaatcaaaactatcaaaaaaatgaaatggaagaaga 18882852  T
Q  99 aatgagaaggataacataagcaacatatatata 131  Q
    ||||| |||||||| |||||||| |||||||||    
T  18882851 aatgaaaaggataaaataagcaatatatatata 18882819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 16712103 - 16712143
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  16712103 aagatgattgattaagaatatgaataattttaaaatgtaac 16712143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 26721029 - 26721074
Alignment:
Q  86 aaatggaagaagaaatgagaaggataacataagcaacatatatata 131  Q
    ||||| |||||||||| | ||||||||||||||||||| |||||||    
T  26721029 aaatgaaagaagaaattaaaaggataacataagcaacaaatatata 26721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37301718 - 37301853
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacg----aagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaag 94  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||| |||     ||||||||||||| ||||||||| ||        |||||||||||    
T  37301718 atatccattagagaatacgaaaaattatagaaatagaaacacacacacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaag 37301816  T
Q  95 aagaaatgagaaggataacataagcaacatatatata 131  Q
    ||||||||| |||||||||||||||||||||||||||    
T  37301817 aagaaatgaaaaggataacataagcaacatatatata 37301853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 21604884 - 21605013
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||||||||||||  |||||||||||||  || |||||| || ||| ||||||||| ||        |||||||||||||||    
T  21604884 atatccattagagaatacgaaaaattatagaaatagaaacacacacaaacaaagcttaaaaagaaaatcaaaactatcaaaaaa-tgaaatggaagaaga 21604982  T
Q  99 aatgagaaggataacataagcaacatatata 129  Q
    ||||| |||||||||||||||||||||||||    
T  21604983 aatgaaaaggataacataagcaacatatata 21605013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 36991376 - 36991232
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacg------aagcttgaagagagaatcaaaaccatnnnnnnnntgaaatgga 92  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||| |||       |||||| |||||| ||||||||| ||        |||||||||    
T  36991376 atatctattagagaatacaaaaaattatagaaatagaaacacacacacacacacacaaagcttaaagagaaaatcaaaactatcaaaaaa-tgaaatgga 36991278  T
Q  93 agaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  36991277 agaagaaatgaaaaggataacataagcaacatatatataagcttag 36991232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 36991191 - 36991151
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36991191 aagaggattgattaagaatatgaataattttaaaatgtaac 36991151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 21605061 - 21605101
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  21605061 aagaggattgattaagaatatgaataattttaaaatttaac 21605101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 37301986 - 37302022
Alignment:
Q  152 ggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||    
T  37301986 ggattgattaagaatatgaataattttaaaatgtaac 37302022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 3395 - 3355
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3395 aagaggattgattaagaatatgaataattttaaaatgtaac 3355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 3555 - 3430
Alignment:
Q  1 atatccattagagaatacaaaaaattatag--atagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||| |||||||||||||| ||||  |||||||||||||| ||| |||| |||||||| || |||||  ||        |||||||||||||||    
T  3555 atatccattaaagaatacaaaaaataatagaaatagaaacacacacacacaaagcctgaagagaaaaacaaaattat-caaaaaatgaaatggaagaaga 3457  T
Q  99 aatgagaaggataacataagcaacata 125  Q
    ||| | |||||| ||||||||||||||    
T  3456 aattaaaaggatgacataagcaacata 3430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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