View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2116_low_6 (Length: 251)
Name: NF2116_low_6
Description: NF2116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2116_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 27426360 - 27426601
Alignment:
| Q |
1 |
ctttttaataactacataacatagacatgaggtaacttcccttcataaacaacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaat |
100 |
Q |
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| T |
27426360 |
ctttttaataactacataacatagacatgaggtaacttcccttcataaagaacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaat |
27426459 |
T |
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| Q |
101 |
gacagaggcctcattccatggtccctgttaggatatccttatttaaagagttgaatggttagtacttagtaggctattttatatgacagggtttagtatg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27426460 |
gacacaggcctcattccatggtccctgttaggatatccttatttaaagagttgaatggttagtacttagtaggctatattatatgacagggtttagtatg |
27426559 |
T |
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| Q |
201 |
agacaatggctcacgaacctccacatggtgttttagaataat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
27426560 |
agacaatggctcacgaacctccacatggtgttttagaataat |
27426601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 27416260 - 27416377
Alignment:
| Q |
51 |
aacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagag |
150 |
Q |
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||||||| ||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||| |
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| T |
27416260 |
aacaagtacacaataccaattcatcaacaagggaaattatttcactgaatgacataggcctcattatatggttcctgttaggatatccttatctaaagaa |
27416359 |
T |
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| Q |
151 |
ttgaatggttagtactta |
168 |
Q |
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| T |
27416360 |
ttgaatggttagtactta |
27416377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 27420803 - 27420906
Alignment:
| Q |
54 |
aagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagagttg |
153 |
Q |
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||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||||||||||| |||||| ||| |
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| T |
27420803 |
aagtgtacaataacaattcagtaacaaagtcaattgtttcactgaatgacataggctgcattctatggtgcctgttaggatatccttatctaaagaattg |
27420902 |
T |
|
| Q |
154 |
aatg |
157 |
Q |
| |
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|||| |
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| T |
27420903 |
aatg |
27420906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 27569575 - 27569459
Alignment:
| Q |
53 |
caagtgcacaataacaattc-agtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagagt |
151 |
Q |
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|||||||||||| ||||| | |||||||| |||||||||| |||| ||||||| | |||||||| ||||| ||||||||||||||||||| |||||| | |
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| T |
27569575 |
caagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatggttcctgttaggatatccttatctaaagaat |
27569476 |
T |
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| Q |
152 |
tgaatggttagtactta |
168 |
Q |
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|||||||||| |||||| |
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| T |
27569475 |
tgaatggttactactta |
27569459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 27413358 - 27413423
Alignment:
| Q |
107 |
ggcctcattccatggtccctgttaggatatccttatttaaagagttgaatggttagtacttagtag |
172 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||| | |||| ||||||||||| |||| ||||| |
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| T |
27413358 |
ggcctcattctatggttcctgttaggatatccttatcttaagaattgaatggttattactgagtag |
27413423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 27565640 - 27565598
Alignment:
| Q |
62 |
aataacaattcagtaacaaggtcaattatttcactgaatgaca |
104 |
Q |
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| T |
27565640 |
aataacaattcagtaacaaggtaaactattttactgaatgaca |
27565598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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