View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2116_low_9 (Length: 245)
Name: NF2116_low_9
Description: NF2116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2116_low_9 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 27426025 - 27426253
Alignment:
| Q |
17 |
agtttagtagaaatannnnnnngtattctagttatctcatcaaattctaaaagatgagaaggaaatgaccattagattggcaaattgtaaatatgttttg |
116 |
Q |
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| T |
27426025 |
agtttagtagaaatatttttttgtattctagttatctcatcaaattctaaaagatgagaaggaaatgaccattagattagcaaattgtaaatatgttttg |
27426124 |
T |
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| Q |
117 |
tttaatgagaatgaattcaactactcaagcagctcttctacgtttttggtttatcgcacttaatgaacttataaacttatgaaatacgactatatgagta |
216 |
Q |
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| T |
27426125 |
tttaatgagaatgaattcaactactcaagcagctcttttacgtttttggtttatcgcacttaatgaacttataaacttatgaaatacgactatatgagta |
27426224 |
T |
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| Q |
217 |
atgttgtttgctaaaaggaaaaaatactt |
245 |
Q |
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| T |
27426225 |
atgttgtttactaaaagacaaaaatactt |
27426253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 27565814 - 27565714
Alignment:
| Q |
79 |
aaatgaccattagattggcaaattgtaaatatgttttgtttaatgagaatgaattcaactactcaagcagctcttctacgtttttggtttatcgcactta |
178 |
Q |
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| T |
27565814 |
aaatgaccattagattgataaattgtatatcaattttgtttaacgacaatgaattcgactattcaagcagctcttctatgtttttggtttattgcactta |
27565715 |
T |
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| Q |
179 |
a |
179 |
Q |
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| T |
27565714 |
a |
27565714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 27415940 - 27416005
Alignment:
| Q |
112 |
ttttgtttaatgagaatgaattcaactactcaagcagctcttctacgtttttggtttatcgcactt |
177 |
Q |
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| T |
27415940 |
ttttgtttagtgaaaacgaattcgactactcaagcagctcctctacttttttggtttattgcactt |
27416005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 27423534 - 27423637
Alignment:
| Q |
117 |
tttaatgagaatgaattcaactactcaagcagctcttctacgtttttggtttatcgcacttaatgaacttataaacttatgaaatacgactatatgagta |
216 |
Q |
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| T |
27423534 |
tttaatgacaatgaattcgactactcaaacatctcctttgtgtttttggtttattgcacttaa---------aaacttatgaaatatgactatatgagta |
27423624 |
T |
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| Q |
217 |
atgttgtttgcta |
229 |
Q |
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| T |
27423625 |
atgttgcttgcta |
27423637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 27569885 - 27569811
Alignment:
| Q |
105 |
aaatatgttttgtttaatgagaatgaattcaactactcaagcagctcttctacgtttttggtttatcgcacttaa |
179 |
Q |
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| T |
27569885 |
aaatatattttgtttaatgacaatgaattcgactactcaaatatctcctctctgtttttggtttattgcacttaa |
27569811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 27412970 - 27413045
Alignment:
| Q |
104 |
taaatatgttttgtt-taatgagaatgaattcaactactcaagcagctcttctacgtttttggtttatcgcactta |
178 |
Q |
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||||||| ||||||| |||||| || |||||| |||| ||||| | |||||||| ||||||||||||| ||||||| |
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| T |
27412970 |
taaatattttttgttataatgaaaacgaattcgactattcaagtaactcttctatgtttttggtttattgcactta |
27413045 |
T |
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