View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21170_high_6 (Length: 302)
Name: NF21170_high_6
Description: NF21170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21170_high_6 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 14008435 - 14008724
Alignment:
| Q |
1 |
ccaatgtcatgggaaacaaacaattgaaacatatatcatcctcttcactgcccaaggaaacaaatcagaagcactaagccccaaaggtttcccccaaact |
100 |
Q |
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| T |
14008435 |
ccaatgtcatgggaaacaaacaattgaaacatatatcatcctcttcactgcccaaggaaacaaatcagaagcactaagccccaaaggtttcccccaaact |
14008534 |
T |
|
| Q |
101 |
gtttttattccaacaatcaaatcttcagaaactatgaatctctccataaaaagttttggctttctctcaatctctcaagaaacaggtgaatcgccctcaa |
200 |
Q |
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| T |
14008535 |
gtttttattccaacaatcaaatcttcagaaactatgaatctctccataaaaagttttggctttctctcaatctctcaagaaacaggtgaatcgccctcaa |
14008634 |
T |
|
| Q |
201 |
tctttttctcaatccttttcgttgaacttgaaatctctgaaccaaatctttctctcaatttggcgcttactcagtggttgaactcgaatc |
290 |
Q |
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| T |
14008635 |
tctttttctcaatccttttcgttgaacttgaaatctctgaaccaaatctttctctcaatttggcgcttactcagtggttgaactcgaatc |
14008724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 42935829 - 42935569
Alignment:
| Q |
21 |
caattgaaacatatatcatcctcttcactgcccaaggaaacaaatcagaagcactaagccccaaaggtttcccccaaactgtttttatt--ccaacaatc |
118 |
Q |
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| T |
42935829 |
caattgaaatatatatcatcctcttcactgcccaaggaaacgaatcagaagcactaagccccaaaggtttcccccaaactgttttttttttccaacaatc |
42935730 |
T |
|
| Q |
119 |
aaatcttcagaaactatgaatctctccataaaaagttttggctttctctcaatctctcaagaaacaggtgaatcgccctcaatctttttctcaatccttt |
218 |
Q |
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| T |
42935729 |
aaatcttcagaaactatgaatctctccataaaaagttttggctttctctcaatctctcaagaaacaggtgactcgccctcaatctt------------tt |
42935642 |
T |
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| Q |
219 |
tcgttgaacttgaaatctctgaaccaaatctttctctcaatttgg-cgcttactcagtggttgaactcgaatc |
290 |
Q |
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| T |
42935641 |
tcgttgaacttgaaatctcttaaccaaatctttctctcaatttggccgcttactcagtcgttaaactcgaatc |
42935569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 35242091 - 35241872
Alignment:
| Q |
32 |
tatatcatcctcttcactgcccaaggaaacaaa-tcagaagcactaagccccaaagg-tttcccccaaactgtttttattccaacaatcaaatcttcaga |
129 |
Q |
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|||||||||||||||||| || ||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||| | | |||| || ||||||||| |
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| T |
35242091 |
tatatcatcctcttcactccctaaggaaaaaaaatcagaagcactaagctccaaaacatttcctccaaactgtttttct-caaacactcgaatcttcagg |
35241993 |
T |
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| Q |
130 |
aactatgaatctctccataaaaagttttggctttctctcaatctctcaagaaacaggtgaatcgccctcaatctttttctcaatccttttcgttgaactt |
229 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
35241992 |
aactatgaatctctccagaaaaagttttggctttctctcaatctttccagaaacaggtgaatcgccctcaatctttatctcaatcctttttgttgaactt |
35241893 |
T |
|
| Q |
230 |
gaaatctctgaaccaaatctt |
250 |
Q |
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|||||||||||| |||||||| |
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| T |
35241892 |
gaaatctctgaatcaaatctt |
35241872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 10942 - 11202
Alignment:
| Q |
21 |
caattgaaacatatatcatcctcttcactgcccaaggaaacaaatcagaagcactaagccccaaaggtttcccccaaactgtttttatt--ccaacaatc |
118 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
10942 |
caattgaaatatatatcatcctcttcactgcccaaggaaacgaatcagaagcactaagccccaaaggtttcccccaaactgttttttttttccaacaatc |
11041 |
T |
|
| Q |
119 |
aaatcttcagaaactatgaatctctccataaaaagttttggctttctctcaatctctcaagaaacaggtgaatcgccctcaatctttttctcaatccttt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
11042 |
aaatcttcagaaactatgaatctctccataaaaagttttggctttctctcaatctctcaagaaacaggtgactcgccctcaatct------------ttt |
11129 |
T |
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| Q |
219 |
tcgttgaacttgaaatctctgaaccaaatctttctctcaatttgg-cgcttactcagtggttgaactcgaatc |
290 |
Q |
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| T |
11130 |
tcgttgaacttgaaatctcttaaccaaatctttctctcaatttggccgcttactcagtcgttaaactcgaatc |
11202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 49020289 - 49020393
Alignment:
| Q |
186 |
gtgaatcgccctcaatctttttctcaatccttttcgttgaacttgaaatctctgaaccaaatctttctctcaatttggcgcttactcagtggttgaactc |
285 |
Q |
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|||||||||||||||||||| |||| ||| ||||| ||||| ||||||||| |||| ||||| ||||| |||| || ||| | ||||| |||||||| |
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| T |
49020289 |
gtgaatcgccctcaatctttctctccatctttttcattgaatttgaaatctttgaatcaaatatttcttgcaatctgatgctcaatcagtcattgaactc |
49020388 |
T |
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| Q |
286 |
gaatc |
290 |
Q |
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||||| |
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| T |
49020389 |
gaatc |
49020393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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