View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21170_low_1 (Length: 593)
Name: NF21170_low_1
Description: NF21170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21170_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 30413655 - 30413150
Alignment:
| Q |
18 |
cactgccataccaatcccagtatcccacaacgctatattaaaactattcaactcatattttactccaatgatctgaaaaatatgcaactctaacccacac |
117 |
Q |
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| T |
30413655 |
cactgccataccaatcccagtatcccacaacgctatattataactattcaactcatattttactccaatgatctgaaaaatatgcaactctaacccacac |
30413556 |
T |
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| Q |
118 |
tttttgtcaaaaaagagcaacacttatcactttcatatttatatgaaccaatcttttatttcaatgctaccaaataataatttagctactttnnnnnnnn |
217 |
Q |
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| T |
30413555 |
tttttgtcaaaaaagagcaacacttatcactttcatatttatatgaaccaatcttttatttcaatgctaccaaataataattaagctactttaaaaaaaa |
30413456 |
T |
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| Q |
218 |
ttgatgcaacctactttgccacctcaagttcttccaattttgagtagaaaaaataacgaacaaatcctttctcccattaaaccttcttagatacttccat |
317 |
Q |
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| T |
30413455 |
ttgatgcaacctactttgccaccttaagttcttccaattttgagtagaaaaaataacgaacaaatcctttctcccattaaaccttcttagatacttccat |
30413356 |
T |
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| Q |
318 |
tgaagttgctattatgacatttcatttatttcttcacttaaagatacatttggctctttttcaatgttgttctaaaccactaatgcttgatatatgaccc |
417 |
Q |
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| T |
30413355 |
tgaagttgctattatgacatttcatttatttcttcacttaaagatacatttggctctttttcaatgttgttctaaaccactaatgcttgatatatgaccc |
30413256 |
T |
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| Q |
418 |
tttatactttgatggttgtttgatgttgagattaagagctctccacaccactaattgtgtcattagaattctgaagtggttccaatgatctcacaatctt |
517 |
Q |
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| T |
30413255 |
tttatactttgatggttgtttgatgttgagattaagagctctccacaccactaattgggtcattagaattctgaagtggttccaatgatctcacaatctt |
30413156 |
T |
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| Q |
518 |
ttctat |
523 |
Q |
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|||||| |
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| T |
30413155 |
ttctat |
30413150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 444 - 583
Target Start/End: Complemental strand, 30412408 - 30412269
Alignment:
| Q |
444 |
tgagattaagagctctccacaccactaattgtgtcattagaattctgaagtggttccaatgatctcacaatcttttctatgcttggtctatattttggtc |
543 |
Q |
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||||||||||||||| || |||| | |||||||| |||| ||||||| | |||| |||||||||||||| || ||| |||||||||||| |||| |
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| T |
30412408 |
tgagattaagagctccgtactccacctactgtgtcatcggaatgctgaagttgctccagtgatctcacaatctcttgtatttttggtctatattctggtt |
30412309 |
T |
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| Q |
544 |
tttccgacagacattgaatcacaatgtgagctactttcat |
583 |
Q |
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| T |
30412308 |
tttcagacagacattgaattataatatgagctaatttcat |
30412269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 580
Target Start/End: Complemental strand, 30423531 - 30423426
Alignment:
| Q |
475 |
tgtcattagaattctgaagtggttccaatgatctcacaatcttttctatgcttggtctatattttggtctttccgacagacattgaatcacaatgtgagc |
574 |
Q |
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||||||| |||| ||||||| ||||||| |||||||| | || || ||| |||||||||||||| || | ||||||||||| |||| ||| ||||| |
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| T |
30423531 |
tgtcattggaatcctgaagttgttccaacgatctcaccacctcgtcaatgtttggtctatatttttgttctgccgacagacatcgaattgcaacatgagc |
30423432 |
T |
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| Q |
575 |
tacttt |
580 |
Q |
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|||||| |
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| T |
30423431 |
tacttt |
30423426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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