View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21170_low_2 (Length: 586)
Name: NF21170_low_2
Description: NF21170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21170_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Original strand, 33750839 - 33751324
Alignment:
| Q |
19 |
acacttttaattagttcctgaactcaacaacaatggaacagttacttgtgtaaattagtgcgtgtttgaccgaggttaaggtattgattagcttcgcttt |
118 |
Q |
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| T |
33750839 |
acacttttaattagttcctgaactcaacaacaatggaacagttacttgtgtaaattagtgcgtgtttgaccgaggttaaggtattgattagcttcgcttt |
33750938 |
T |
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| Q |
119 |
gcaacaatgtgcataatctttcttccactagattttttcggaggaggaagttgccttgccagctgcaagtgcaaatcgtgatttcaatttttgtttttgc |
218 |
Q |
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| T |
33750939 |
gcaacaatgtgcataatctttcttccactagattttttcggaggaggaagttaccatgccagctgcaagtgcaaatcgtgatttcaatttttgtttttgc |
33751038 |
T |
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| Q |
219 |
agaagaatctgctatgtagaattttgctgtgcaatgtgcagctagctagtgtctttcttgcttcaactacnnnnnnncacgaacaaaattgccttgatat |
318 |
Q |
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| T |
33751039 |
agaagaatctgctatgtagaattttgctgtgcaatgtgc----agctagtgtctttcttgcttcaactactttttttcacgaacaaaattgccttgatat |
33751134 |
T |
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| Q |
319 |
atacctgcaagtgcaaatcgtgattttaatgtaatctgctttctaaaatattctacttaatgtgtggctttgttgaattatattatagtataaatactag |
418 |
Q |
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| T |
33751135 |
atacctgcaactgcaaatcgtgattttaatgtaatctgctttctaaaatattgtacttaatgtgtggctttattgaattatattatagtataaatactag |
33751234 |
T |
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| Q |
419 |
ttctgttcactgattttgtctttttagcttaaagggttatatattcagcttcaatgagtacattgttttttaataaggataagaatataa |
508 |
Q |
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| T |
33751235 |
ttctgttcactgattttgtctttttagcttaaagggttatatattcagcttcaatgagtgcattgttttttaataaggataagaatataa |
33751324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 33719443 - 33719578
Alignment:
| Q |
99 |
gtattgattagcttcgctttgcaacaatgtgcataatctttcttccactagattttttcggagg-aggaagttgccttgccagctgcaagtgcaaatcgt |
197 |
Q |
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|||||||||||||| ||| ||||| |||||||||||| ||||| || ||||||||| ||| |||||||||| || |||||||||||||| || |
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| T |
33719443 |
gtattgattagctttgctgtgcaa---tgtgcataatctctcttctacgagatttttttttagggaggaagttgcttt-----ctgcaagtgcaaatagt |
33719534 |
T |
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| Q |
198 |
gatttcaatttttgtttttgcagaagaatctgctatgtagaatt |
241 |
Q |
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| T |
33719535 |
gatttcaatgtttgattttgaagaagaatccgctttgtagaatt |
33719578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 32575995 - 32576023
Alignment:
| Q |
319 |
atacctgcaagtgcaaatcgtgattttaa |
347 |
Q |
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| T |
32575995 |
atacctgcaagtgcaaatcgtgattttaa |
32576023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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