View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21170_low_5 (Length: 355)

Name: NF21170_low_5
Description: NF21170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21170_low_5
NF21170_low_5
[»] chr1 (4 HSPs)
chr1 (172-344)||(14008234-14008406)
chr1 (172-349)||(42935915-42936092)
chr1 (172-271)||(21221463-21221562)
chr1 (170-198)||(25280962-25280990)
[»] scaffold0224 (1 HSPs)
scaffold0224 (179-349)||(10686-10856)
[»] chr2 (1 HSPs)
chr2 (172-271)||(42948817-42948916)
[»] chr4 (5 HSPs)
chr4 (171-279)||(22292595-22292703)
chr4 (172-246)||(4118084-4118158)
chr4 (172-229)||(18207855-18207912)
chr4 (172-277)||(5452201-5452308)
chr4 (302-330)||(4117986-4118014)
[»] chr3 (2 HSPs)
chr3 (93-173)||(52763593-52763675)
chr3 (172-278)||(13366608-13366714)
[»] chr5 (6 HSPs)
chr5 (172-246)||(21157389-21157463)
chr5 (172-280)||(19390212-19390320)
chr5 (171-251)||(39480450-39480530)
chr5 (170-228)||(43028222-43028280)
chr5 (172-226)||(41395680-41395734)
chr5 (302-330)||(21157291-21157319)
[»] chr6 (2 HSPs)
chr6 (172-229)||(164497-164554)
chr6 (172-226)||(15434718-15434772)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 172 - 344
Target Start/End: Original strand, 14008234 - 14008406
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 271  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  14008234 atctttatatctaatccaaaggtacatttgcaaacaatacttacaaaaccctaaacctagcacatttggcactaaacacaatttggtacacctaaccaca 14008333  T
Q  272 attaatgcataacaacttgagtaccaaatgtgattttgaaattcaaatctcccaactacaaatctatattcat 344  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14008334 attaatgcataactacttgagtacctaatgtgattttgaaattcaaatctcccaactacaaatctatattcat 14008406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 172 - 349
Target Start/End: Complemental strand, 42936092 - 42935915
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 271  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42936092 atctttatatctaatccaaaggtacatttgcaaacaatacttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 42935993  T
Q  272 attaatgcataacaacttgagta-ccaaatgtgattttgaaattcaaatctcccaactacaaatctatattcatctcac 349  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||||||||||| |||| ||||    
T  42935992 attaatgcataactacttgagtaccctaatgtgattttgaaattcaaatctccc-actacaaatctataatcatgtcac 42935915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 21221562 - 21221463
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 271  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| |  |||||| ||||||||  ||||||| ||||||||||||    
T  21221562 atctttatatttaatccaaaggtacatttgcaaacaacatttacataaccctaaacctaccttatttggagctaaacaacatttgctgcacctaaccaca 21221463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 25280962 - 25280990
Alignment:
Q  170 taatctttatatctaatccaaaggtacat 198  Q
    |||||||||||||||||||||||||||||    
T  25280962 taatctttatatctaatccaaaggtacat 25280990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 10686 - 10856
Alignment:
Q  179 tatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccacaattaatg 278  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10686 tatctaatccaaaggtacatttgcaaacaatacttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccacaattaatg 10785  T
Q  279 cataacaacttgagta-ccaaatgtgattttgaaattcaaatctcccaactacaaatctatattcatctcac 349  Q
    |||||| ||||||||| || ||||||||||||||||||||||||||| |||||||||||||| |||| ||||    
T  10786 cataactacttgagtaccctaatgtgattttgaaattcaaatctccc-actacaaatctataatcatgtcac 10856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 42948916 - 42948817
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |  |||||||||||||||  ||||||| ||||||||||||    
T  42948916 atctttatatctaatccaaaggtacatttgcaaacaacatttacataaccctaaacctaccttatttggcgctaaacaacatttgctgcacctaaccaca 42948817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 22292703 - 22292595
Alignment:
Q  171 aatctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccac 270  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | | |  ||||||||||||||||| |||||  |||||||||||    
T  22292703 aatctttatatctaatccaaaggtacatttgcaaacaatactaacaaaaccctaaaacaatcttatttggcgctaaacacattttgccccacctaaccac 22292604  T
Q  271 aattaatgc 279  Q
    | |||||||    
T  22292603 atttaatgc 22292595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 4118158 - 4118084
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaa 246  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||    
T  4118158 atctttatatctaatccaaaggtacatttgcaaacaacatttaaaaaaccctaaaccaagcagatttggcgctaa 4118084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 18207855 - 18207912
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacct 229  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||    
T  18207855 atctttatatctaatccaaaggtacatttgcaaacaaaacttccaaaaccctaaacct 18207912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 277
Target Start/End: Original strand, 5452201 - 5452308
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacc-tagcacatttggcgctaaaca-caatttgctacacctaacca 269  Q
    |||||||||| |||| |||||||||||||||||||||||  |||| ||||||||||| ||    ||||||||||||||| |  |||||| ||||||||||    
T  5452201 atctttatatttaattcaaaggtacatttgcaaacaatacatacataaccctaaaccctaaattatttggcgctaaacaactttttgcttcacctaacca 5452300  T
Q  270 caattaat 277  Q
    || |||||    
T  5452301 catttaat 5452308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 4118014 - 4117986
Alignment:
Q  302 tgattttgaaattcaaatctcccaactac 330  Q
    |||||||||||||||||||||||||||||    
T  4118014 tgattttgaaattcaaatctcccaactac 4117986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 52763675 - 52763593
Alignment:
Q  93 gttagagtccgattttgaatatgttttcaaggttcataataagagag--agagtaacataataaaattaacaaagggcataat 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||    
T  52763675 gttagagtccgattttgaatatgttttcaaggttcataataagagagagagagtaacataataagattaacaaaggacataat 52763593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 13366714 - 13366608
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 271  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||  ||||||| ||||| ||| |||||  ||||||||||||    
T  13366714 atctttatatctaatccaaaggtacatttgcaaacaatactaacaaaaccctaaaacaagcttatttggcactaaagacattttgccccacctaaccaca 13366615  T
Q  272 attaatg 278  Q
     ||||||    
T  13366614 cttaatg 13366608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 21157463 - 21157389
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaa 246  Q
    |||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||    
T  21157463 atctttatatctaatccaaatgtacatttgcaaacaacatttaaaaaaccctaaaccaagcagatttggcgctaa 21157389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 280
Target Start/End: Original strand, 19390212 - 19390320
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacacaatttgctacacctaaccaca 271  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||| | |||||||| |  ||||||| |||||||  ||||| | ||||||||| |     
T  19390212 atctttatatttaatccaaaggtacatttgcaaacaatactttcaaaatcttaaacctaccttatttggcactaaacaacatttgttgcacctaacctcg 19390311  T
Q  272 attaatgca 280  Q
    |||||||||    
T  19390312 attaatgca 19390320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 39480450 - 39480530
Alignment:
Q  171 aatctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacctagcacatttggcgctaaacaca 251  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||    ||||||||||||||||    
T  39480450 aatctttatatctaatccaaaggtacatttgcaaacaacactaacaaaaccctaaaactagattctttggcgctaaacaca 39480530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 43028280 - 43028222
Alignment:
Q  170 taatctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacc 228  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||||    
T  43028280 taatctttatatctaatccaaaggtacaattgcaaacaatacatacataaccctaaacc 43028222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 41395734 - 41395680
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaa 226  Q
    ||||||||||||||||||||||| | |||||||||||   || ||||||||||||    
T  41395734 atctttatatctaatccaaaggtgcctttgcaaacaactcttgcaaaaccctaaa 41395680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 21157319 - 21157291
Alignment:
Q  302 tgattttgaaattcaaatctcccaactac 330  Q
    |||||||||||||||||||||||||||||    
T  21157319 tgattttgaaattcaaatctcccaactac 21157291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 164554 - 164497
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaacct 229  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||    
T  164554 atctttatatctaatccaaaggtacatttgcaaacaaaacttccaaaaccctaaacct 164497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 15434772 - 15434718
Alignment:
Q  172 atctttatatctaatccaaaggtacatttgcaaacaatatttacaaaaccctaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| | | |||||||||||||    
T  15434772 atctttatatctaatccaaaggtacctttgcaaacaacactaacaaaaccctaaa 15434718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University