View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21170_low_6 (Length: 348)
Name: NF21170_low_6
Description: NF21170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21170_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 52557607 - 52557927
Alignment:
| Q |
13 |
ataatactaataatttacaactttaaagcaatatttaatgataatctaggatctaaactannnnnnn-acgaggactctctaaattagcccatgatgaac |
111 |
Q |
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| T |
52557607 |
ataatactaataatttacaactttaaagcaatatttaatgataatctaggatataaactattttttttacgaggactctctaaattagcccatgatgaac |
52557706 |
T |
|
| Q |
112 |
atggaataggctctaaacttgtttttgtttaaaagaatatagttgcataattcacacacacataatgtgcttgagaagaggggggt-attgttcacaatt |
210 |
Q |
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| T |
52557707 |
atggaataggctctaaacttgtttttgtttaaaagaatatagttgcataattcacacacacataatgtgct-gagaagaggggggttattgttcacaatt |
52557805 |
T |
|
| Q |
211 |
ttcttatgatttgtatttacgggaacttttcaaattaaaatatgaaatcatcatttttacaatgataatgattgcaatcttgataggctgattatgtttg |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52557806 |
ttcttatgatttgtatttacaggaacttttcaaattaaaatatgaaatcatcatttttacaatgataatgattgcaatcttgataggctgattatgtttg |
52557905 |
T |
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| Q |
311 |
tggcgtcccattccacaatatt |
332 |
Q |
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|||||||||||||||||||||| |
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| T |
52557906 |
tggcgtcccattccacaatatt |
52557927 |
T |
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