View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21170_low_8 (Length: 300)
Name: NF21170_low_8
Description: NF21170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21170_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 29554285 - 29554003
Alignment:
| Q |
1 |
cattactatccacatcacataaaccattctctaatgccctaaccaaattctcgaagaagtttttagtcacactggtcaatccagccagttttctgcgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554285 |
cattactatccacatcacataaaccattctctaatgccctaaccaaattctcaaagaagtttttagtcacactggtcaatccagccagttttctgcgaaa |
29554186 |
T |
|
| Q |
101 |
attgttgaatccttcagacggggcttcagcactgaggaatgcttggagttccttttcggcgcattgatgaagtctctccaaccctgattctgccacacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29554185 |
attgttgaatccttcagacggggcttcagcactgaggaatgcttggagttccttttcggcgcattgatgaagtctctccaaacctgattctgccacacct |
29554086 |
T |
|
| Q |
201 |
tgcaagtactcaaagagctgctttttagcatgctcatgctcagctaaatagtatccatatgcatatgtccacttcaatacccg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554085 |
tgcaagtactcaaagagctgctttttagcatgctcatgctcagctaaatagtatccatatgcatatgtccacttcaatacccg |
29554003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 29539440 - 29539158
Alignment:
| Q |
1 |
cattactatccacatcacataaaccattctctaatgccctaaccaaattctcgaagaagtttttagtcacactggtcaatccagccagttttctgcgaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| |
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| T |
29539440 |
cattactatccacatcacttaaaccattctctaatgccctaaccaaattctcgaagaagtttttagtcacacgggtcaatccagctagttttgagcgaaa |
29539341 |
T |
|
| Q |
101 |
attgttgaatccttcagacggggcttcagcactgaggaatgcttggagttccttttcggcgcattgatgaagtctctccaaccctgattctgccacacct |
200 |
Q |
| |
|
|| ||||||| ||| ||| ||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||| |
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| T |
29539340 |
atcgttgaattctttagaggggccttcagcactgaggaatacttggagttccttttcggcacatagatgaagtctctccaagcctgattctgcctcacct |
29539241 |
T |
|
| Q |
201 |
tgcaagtactcaaagagctgctttttagcatgctcatgctcagctaaatagtatccatatgcatatgtccacttcaatacccg |
283 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29539240 |
tgcaagtactcaaagagcttctttttagcaagctcatgctcatctaaatagtatccatatgcatatgtccacttcaatacccg |
29539158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 42780402 - 42780684
Alignment:
| Q |
1 |
cattactatccacatcacataaaccattctctaatgccctaaccaaattctcgaagaagtttttagtcacactggtcaatccagccagttttctgcgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| |||||| |||||| |
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|
| T |
42780402 |
cattactatccacatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacaccggtcaatccagctagttttgagcgaaa |
42780501 |
T |
|
| Q |
101 |
attgttgaatccttcagacggggcttcagcactgaggaatgcttggagttccttttcggcgcattgatgaagtctctccaaccctgattctgccacacct |
200 |
Q |
| |
|
|| ||||||| ||| ||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||| ||||| |
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|
| T |
42780502 |
atcgttgaattctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctccaaacttgattctgcctcacct |
42780601 |
T |
|
| Q |
201 |
tgcaagtactcaaagagctgctttttagcatgctcatgctcagctaaatagtatccatatgcatatgtccacttcaatacccg |
283 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42780602 |
tgcaagtactcaaagaactgctttttagcatgctcatgctctgctaaatagtatccatatgcatatgtccacttcaatacccg |
42780684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 42194211 - 42194089
Alignment:
| Q |
72 |
ctggtcaatccagccagttttctgcgaaaattgttgaatccttcagacggggcttcagcactgaggaatgcttggagttccttttcggcgcattgatgaa |
171 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42194211 |
ctggtcaatccagctagtttggtgcgaaaatcgttgaattctttagacgggccttcagcactgaggaatacttggagttccttttcggcgcattgatgaa |
42194112 |
T |
|
| Q |
172 |
gtctctccaaccctgattctgcc |
194 |
Q |
| |
|
|||||||||| |||||||||||| |
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| T |
42194111 |
gtctctccaaacctgattctgcc |
42194089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 42193985 - 42193899
Alignment:
| Q |
197 |
accttgcaagtactcaaagagctgctttttagcatgctcatgctcagctaaatagtatccatatgcatatgtccacttcaatacccg |
283 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42193985 |
accttgcaagtactcaaagaactgctttttagcatgctcatgctcggctaaatagtatccatatgcatatgtccacttcaatacccg |
42193899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42194732 - 42194659
Alignment:
| Q |
1 |
cattactatccacatcacataaaccattctctaatgccctaaccaaattctcgaagaagtttttagtcacactg |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42194732 |
cattactatccacatcacataaaccattctctaatgccctgaccaaattctcgaagaagtttttagtcacactg |
42194659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 25211820 - 25211741
Alignment:
| Q |
197 |
accttgcaagtactcaaagagctgctttttagcatgctcatgctcagctaaatagtatccatatgcatatgtccacttca |
276 |
Q |
| |
|
||||||||| |||||||||| ||| ||||| ||| ||||||||||| ||||||||| ||||||||||| ||||| |||| |
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|
| T |
25211820 |
accttgcaaatactcaaagaactgtttttttgcaccctcatgctcaggtaaatagtaaccatatgcatacgtccatttca |
25211741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 25212175 - 25212124
Alignment:
| Q |
23 |
accattctctaatgccctaaccaaattctcgaagaagtttttagtcacactg |
74 |
Q |
| |
|
|||||||||||| ||||| || |||||||| ||| ||||||||||||||||| |
|
|
| T |
25212175 |
accattctctaaagccctcactaaattctcaaagtagtttttagtcacactg |
25212124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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