View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21171_high_2 (Length: 345)
Name: NF21171_high_2
Description: NF21171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21171_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 47247150 - 47247459
Alignment:
| Q |
19 |
acaacaacttagtaaatgaatttgaattttgaaaagtttggcaaataaaatttaactacnnnnnnnnnntattacaaaaatataatattattaagcatca |
118 |
Q |
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| T |
47247150 |
acaacaacttagtaaatgaatttgaattttgaaaagtttggaaaataaaatttaactacaaaaaaaaaatattacaaaaatataatattattaagcatca |
47247249 |
T |
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| Q |
119 |
ttttaaaattgtctaaaagatgtacaaataccatttttatgtaagacacatggccattgggcttcacctaaccgtccatctcaccagtaacataatgatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47247250 |
ttttaaaattgtctaaaagatgtacaaataccatttttatgtaagacacatggccattgggcttcacctaaccgtccatctcaccagtaacataatgatc |
47247349 |
T |
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| Q |
219 |
gccctatcaaacatttcagaaaggatttactatctgataactacattttacattgatgctgattcaacaacacaatacatctaccgtccattttcacaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47247350 |
gccctatcaaacatttcagaaaggatttactatctgataactacattttacattgatgctgattcaacaacacaatacatctaccgtccattttcacaat |
47247449 |
T |
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| Q |
319 |
tgctgtcaat |
328 |
Q |
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|||||||||| |
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| T |
47247450 |
tgctgtcaat |
47247459 |
T |
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