View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21171_high_4 (Length: 235)
Name: NF21171_high_4
Description: NF21171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21171_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8843876 - 8844110
Alignment:
| Q |
1 |
ccacctacacttccaaatgaagctccaaagattccaatcaaggtaccaacaatgatttgccatccaagtcttatatcctattaatgattaaacaatcaaa |
100 |
Q |
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| T |
8843876 |
ccacctacacttccaaatgaagctccaaagattccaatcaaggtaccaacaatgatttgccatccaagtcttatatcctattaatgattaaacaatcaaa |
8843975 |
T |
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| Q |
101 |
ttctatacacaataacacacatttatataaggaaatagacacttgagagaattattatatggcaaagtagaagagatattgtattcaaaaggaaataatt |
200 |
Q |
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| T |
8843976 |
ttctatacacaataacacacatttatataaggaaatagacacttgagagaattattatatagcaaagtagaagagatattgtattcaaaaggaaataatt |
8844075 |
T |
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| Q |
201 |
gtaatggatgcaaaacacttactggccaaacatgt |
235 |
Q |
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| T |
8844076 |
gtaatagatgcaaaacacttactggccaaacatgt |
8844110 |
T |
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