View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21171_low_1 (Length: 668)
Name: NF21171_low_1
Description: NF21171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21171_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 179 - 463
Target Start/End: Original strand, 45468080 - 45468364
Alignment:
| Q |
179 |
tcagagtactggggtgatggtgattactaggcctaaaggtgggaataggagtttgtgtatggatttggaagaagttaaagcttgtagagatcttggattt |
278 |
Q |
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| T |
45468080 |
tcagagtactggggtgatggtgattactaggcctaaaggtgggaataggagtttgtgtatggatttggaagaagttaaagcttgtagagatcttggattt |
45468179 |
T |
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| Q |
279 |
gagttggaacatgaaagaatttctgctgtttctttctctaattcaacacttgatactagcagtggtggtaattcacctattgctaattggcgaatctccg |
378 |
Q |
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| T |
45468180 |
gagttggaacatgaaagaatttctgctgtttctttctctaattcaacacttgatactagcagtggtggtaattcacctattgctaattggcgaatctccg |
45468279 |
T |
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| Q |
379 |
gtcccggtaggtgtcaattaggtcgatttattcgagtttatttactgtcataaacaatataaaattgtatgaaaacaatttatga |
463 |
Q |
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| T |
45468280 |
gtcccggtaggtctcaattaggtcgatttattcgagtttatttactgtcataaacaatataaaattgtatgaaaacaatttatga |
45468364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 507 - 654
Target Start/End: Original strand, 45468364 - 45468511
Alignment:
| Q |
507 |
atatatgataagcgctcacgttgtaagccttcgattaattcaaaatttaacatttttgttttatattatgtaggtgatgatccaagagatgtgaaggcac |
606 |
Q |
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| T |
45468364 |
atatatgataagcgctcacgttgtaagccttcgattaattcaaaatttaacatttttgttttatattatgtaggtgatgatccaagagatgtgaaggcac |
45468463 |
T |
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| Q |
607 |
gactcaaagtgtgggcacaggcagtagcaatagcatctgccaccaaat |
654 |
Q |
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| T |
45468464 |
gactcaaagtgtgggcacaggcagtagcaatagcatctgccaccaaat |
45468511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 488 - 654
Target Start/End: Complemental strand, 39220717 - 39220548
Alignment:
| Q |
488 |
ttttcaacttatttttgtaatatatgataagcgctcacgttgtaagccttcgattaattcaaaatttaacatttttgttt---tatattatgtaggtgat |
584 |
Q |
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|||||| ||||||||| |||||||||||||||||| | ||| |||| || |||||||| | ||||| |||||||| ||| | ||||||||||||||| |
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| T |
39220717 |
ttttcagcttatttttataatatatgataagcgcttaagttacaagcgttggattaatttagaatttgacatttttttttatttttattatgtaggtgat |
39220618 |
T |
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| Q |
585 |
gatccaagagatgtgaaggcacgactcaaagtgtgggcacaggcagtagcaatagcatctgccaccaaat |
654 |
Q |
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| T |
39220617 |
gatccaacagatgtgaaggcatgactgaaagtgtgggcacaggcagtagcaatagcatctgccaccaaat |
39220548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 45467972 - 45468015
Alignment:
| Q |
71 |
tggtgtgtttgaaaggggaaatagttgggagaatttatgggatc |
114 |
Q |
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| T |
45467972 |
tggtgtgtttgaaaggggaaatagttgggagaatttatgggatc |
45468015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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