View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21171_low_2 (Length: 507)

Name: NF21171_low_2
Description: NF21171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21171_low_2
NF21171_low_2
[»] chr8 (5 HSPs)
chr8 (1-488)||(14229600-14230088)
chr8 (304-465)||(14223102-14223266)
chr8 (323-488)||(14227293-14227453)
chr8 (441-490)||(31586217-31586266)
chr8 (447-488)||(29519278-29519319)
[»] chr5 (2 HSPs)
chr5 (441-490)||(28136273-28136322)
chr5 (441-469)||(22817199-22817227)
[»] chr6 (4 HSPs)
chr6 (226-281)||(10891657-10891712)
chr6 (217-283)||(19060374-19060440)
chr6 (446-490)||(31811988-31812032)
chr6 (444-484)||(32125247-32125287)
[»] chr4 (5 HSPs)
chr4 (441-491)||(45615373-45615423)
chr4 (438-484)||(47665812-47665858)
chr4 (232-281)||(53253541-53253590)
chr4 (437-488)||(39439270-39439321)
chr4 (442-490)||(7148382-7148430)
[»] scaffold0128 (1 HSPs)
scaffold0128 (436-489)||(32168-32221)
[»] chr1 (3 HSPs)
chr1 (452-489)||(27835486-27835523)
chr1 (437-492)||(4785035-4785090)
chr1 (438-488)||(44363999-44364049)
[»] chr7 (3 HSPs)
chr7 (233-281)||(41006836-41006884)
chr7 (219-277)||(25910273-25910331)
chr7 (453-489)||(27012178-27012214)
[»] chr3 (4 HSPs)
chr3 (454-489)||(1921862-1921897)
chr3 (446-488)||(13635634-13635676)
chr3 (217-286)||(20259250-20259318)
chr3 (456-489)||(45382825-45382858)
[»] chr2 (1 HSPs)
chr2 (226-283)||(14516681-14516738)


Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 14230088 - 14229600
Alignment:
Q  1 ttgagaaaatgacataattcaatatacatatgggtcggtgtcggacagtgaaatgtgttcgataccgggacacgactaattgaaggactgtttgtggttc 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||| ||||||||| |||||||||||||    
T  14230088 ttgagaaaatgacataattcaatatacatatgagtcggtgtcggacagtgacatgtgtccgataccaggacacgacaaattgaaggtctgtttgtggttc 14229989  T
Q  101 attgcacaaaacacactcagtatcaaaaacagctttcctactgatcagcaatgctcttgaacagcagccatggggtcgctatggcaaaatggcgtggtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14229988 attgcacaaaacacactcagtatcaaaaacagctttcctactgatcagcaatgctcttgaacagcagccatggggtcgctatggcaaaatggcgtggtgg 14229889  T
Q  201 atattttaacaacaaacataagcaatttgtgaagggatgcctaccatggcggcgtcatagg-ccacaatggcatgtttatatagcagactattaattttc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| |||||||    
T  14229888 atattttaacaacaaacataagcaatttgtgaagggatgcctaccatggcggcgacataggcccacaagggcatgtttatatagcagactatcaattttc 14229789  T
Q  300 taccatcgagaacagtttcggggaatcaaagagtgatcaaaacaaacctaaacctcgagaatcaaactacaaagacacattgtcctaataaaggagaaag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14229788 taccatcgagaacagtttcggggaatcaaagagtgatcaaaacaaacctaaacctcgagaatcaaactacaaagacacattgtcctaataaaggagaaag 14229689  T
Q  400 tcaagtgaaagacacccaacaaccaacaaaatttatattatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgaca 488  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14229688 tcaagtgaaagatacccaacaaccatcaaaatttatattatctctatagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 304 - 465
Target Start/End: Complemental strand, 14223266 - 14223102
Alignment:
Q  304 atcgagaacagtttcggggaatcaaagagtgatcaaaacaaacctaaacctcgagaatcaaactacaaagacacattgtcctaataaaggagaaagtcaa 403  Q
    ||||| |||| ||| ||| |||||||  |||||| ||  ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  14223266 atcgacaacaattttgggcaatcaaattgtgatctaagaaaacctagacctcaagaatcaaactacaaagacacattgtcctgataaaggagaaagtcaa 14223167  T
Q  404 gtgaaagacacccaacaaccaacaaaat---ttatattatctctatagcactgacacttctgatc 465  Q
     |||||| || ||||||| || ||||||   | |||| ||||||||||||| |||||||||||||    
T  14223166 atgaaaggcatccaacaatcatcaaaatgaataatatcatctctatagcaccgacacttctgatc 14223102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 323 - 488
Target Start/End: Complemental strand, 14227453 - 14227293
Alignment:
Q  323 aatcaaagagtgatcaaaacaaacctaaacctcgagaatcaaactacaaagacacattgtcctaataaaggagaaagtcaagtgaaagacacccaacaac 422  Q
    |||||||| |||||| ||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||||||||| || ||| |||     
T  14227453 aatcaaagtgtgatctaagaaaacctaaacctcaagaatcaaactacaaagacacattgtcttaataaagaagtaagtcaagtgaaaggcatccagcaat 14227354  T
Q  423 caacaaaatttatattatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgaca 488  Q
    || ||||||  |||     |||||||||| ||||||||| ||||||| ||||||| ||||||||||    
T  14227353 catcaaaatgaata-----tctatagcaccgacacttctaatcgaagtcatgtctagtgtccgaca 14227293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 490
Target Start/End: Original strand, 31586217 - 31586266
Alignment:
Q  441 ctctatagcactgacacttctgatcgaaggcatgtctggtgtccgacatg 490  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  31586217 ctctatagcactgacacttctgatcaaagccatgtctggtgtccaacatg 31586266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 488
Target Start/End: Complemental strand, 29519319 - 29519278
Alignment:
Q  447 agcactgacacttctgatcgaaggcatgtctggtgtccgaca 488  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||    
T  29519319 agcaccgacacttctaatcaaaggcatgtctggtgtccgaca 29519278  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 490
Target Start/End: Complemental strand, 28136322 - 28136273
Alignment:
Q  441 ctctatagcactgacacttctgatcgaaggcatgtctggtgtccgacatg 490  Q
    ||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  28136322 ctctatagcactgacacttctgatcgaagacgtgtctggtgtctgacatg 28136273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 469
Target Start/End: Complemental strand, 22817227 - 22817199
Alignment:
Q  441 ctctatagcactgacacttctgatcgaag 469  Q
    |||||||||||||||||||||||||||||    
T  22817227 ctctatagcactgacacttctgatcgaag 22817199  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 10891657 - 10891712
Alignment:
Q  226 tttgtgaagggatgcctaccatggcggcgtcataggccacaatggcatgtttatat 281  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||| | |||||||    
T  10891657 tttgtgaatggatgcctgtcatggcggcgtcataggccacaatggcgtatttatat 10891712  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 19060440 - 19060374
Alignment:
Q  217 cataagcaatttgtgaagggatgcctaccatggcggcgtcataggccacaatggcatgtttatatag 283  Q
    |||| |||| ||||||||||||| || ||||||| | | ||||||||||||||| ||||||| ||||    
T  19060440 cataggcaacttgtgaagggatggctgccatggcagtgccataggccacaatggtatgtttacatag 19060374  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 490
Target Start/End: Complemental strand, 31812032 - 31811988
Alignment:
Q  446 tagcactgacacttctgatcgaaggcatgtctggtgtccgacatg 490  Q
    |||||||||||| ||||||| ||||||||||  ||||||||||||    
T  31812032 tagcactgacacctctgatcaaaggcatgtccagtgtccgacatg 31811988  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 32125287 - 32125247
Alignment:
Q  444 tatagcactgacacttctgatcgaaggcatgtctggtgtcc 484  Q
    |||||||| ||||||||||||| ||| ||||||||||||||    
T  32125287 tatagcaccgacacttctgatctaagacatgtctggtgtcc 32125247  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 491
Target Start/End: Original strand, 45615373 - 45615423
Alignment:
Q  441 ctctatagcactgacacttctgatcgaaggcatgtctggtgtccgacatga 491  Q
    |||||||||||  | ||||| ||||||||||||||||||||||||||||||    
T  45615373 ctctatagcacataaacttccgatcgaaggcatgtctggtgtccgacatga 45615423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 47665812 - 47665858
Alignment:
Q  438 tatctctatagcactgacacttctgatcgaaggcatgtctggtgtcc 484  Q
    ||||||||||||||||||||||||| | ||||||||||| |||||||    
T  47665812 tatctctatagcactgacacttctggtggaaggcatgtccggtgtcc 47665858  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 53253541 - 53253590
Alignment:
Q  232 aagggatgcctaccatggcggcgtcataggccacaatggcatgtttatat 281  Q
    |||||||| | |||||||||||| |||||||||||||||||| |||||||    
T  53253541 aagggatgtccaccatggcggcgccataggccacaatggcatttttatat 53253590  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 488
Target Start/End: Complemental strand, 39439321 - 39439270
Alignment:
Q  437 ttatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgaca 488  Q
    |||||||||||||||| |||||||||||||||| | | ||||||||| ||||    
T  39439321 ttatctctatagcacttacacttctgatcgaagacgtctctggtgtctgaca 39439270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 490
Target Start/End: Original strand, 7148382 - 7148430
Alignment:
Q  442 tctatagcactgacacttctgatcgaaggcatgtctggtgtccgacatg 490  Q
    |||||||||| ||||||| ||||  |||||||||| |||||||||||||    
T  7148382 tctatagcaccgacacttttgatgcaaggcatgtccggtgtccgacatg 7148430  T

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Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 32168 - 32221
Alignment:
Q  436 attatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgacat 489  Q
    ||||||||||||||||   ||||||| |||||||| ||||||||||||||||||    
T  32168 attatctctatagcaccagcacttctaatcgaaggtatgtctggtgtccgacat 32221  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 27835523 - 27835486
Alignment:
Q  452 tgacacttctgatcgaaggcatgtctggtgtccgacat 489  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  27835523 tgacacttctgattgaaggcatgtctggtgtccgacat 27835486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 492
Target Start/End: Complemental strand, 4785090 - 4785035
Alignment:
Q  437 ttatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgacatgat 492  Q
    |||||| | |||||| ||||||||||||||||| | |||||||||||| |||||||    
T  4785090 ttatctttgtagcaccgacacttctgatcgaagacgtgtctggtgtccaacatgat 4785035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 488
Target Start/End: Complemental strand, 44364049 - 44363999
Alignment:
Q  438 tatctctatagcactgacacttctgatcgaaggcatgtctggtgtccgaca 488  Q
    ||||||||||||| |||||||||| ||| ||| | ||||||||||||||||    
T  44364049 tatctctatagcattgacacttctaatcaaagccgtgtctggtgtccgaca 44363999  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 41006836 - 41006884
Alignment:
Q  233 agggatgcctaccatggcggcgtcataggccacaatggcatgtttatat 281  Q
    |||||||||| |||||| || | ||||||||||||||||||||||||||    
T  41006836 agggatgcctgccatggtggtgccataggccacaatggcatgtttatat 41006884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 25910331 - 25910273
Alignment:
Q  219 taagcaatttgtgaagggatgcctaccatggcggcgtcataggccacaatggcatgttt 277  Q
    |||||||||||||||||||||||  |||||| |||| |||| ||| || ||||||||||    
T  25910331 taagcaatttgtgaagggatgcccgccatggtggcgccataagccgcagtggcatgttt 25910273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 27012214 - 27012178
Alignment:
Q  453 gacacttctgatcgaaggcatgtctggtgtccgacat 489  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  27012214 gacacctctgatcgaaggcatatctggtgtccgacat 27012178  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 489
Target Start/End: Complemental strand, 1921897 - 1921862
Alignment:
Q  454 acacttctgatcgaaggcatgtctggtgtccgacat 489  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1921897 acacttctgatcgaaggcatgtcaggtgtccgacat 1921862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 488
Target Start/End: Complemental strand, 13635676 - 13635634
Alignment:
Q  446 tagcactgacacttctgatcgaaggcatgtctggtgtccgaca 488  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||    
T  13635676 tagcactgacacttctgatagaaggcgtgtctggtgtctgaca 13635634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 20259250 - 20259318
Alignment:
Q  217 cataagcaatttgtgaagggatgcctaccatggcggcgtcataggccacaatggcatgtttatatagcag 286  Q
    |||| |||||||||||||||||  | ||||||| |||| |||||| | ||||||||||||||||| ||||    
T  20259250 catatgcaatttgtgaagggatctc-accatggtggcgccataggtcgcaatggcatgtttatatggcag 20259318  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Complemental strand, 45382858 - 45382825
Alignment:
Q  456 acttctgatcgaaggcatgtctggtgtccgacat 489  Q
    ||||||||||||||||||||| ||||||||||||    
T  45382858 acttctgatcgaaggcatgtccggtgtccgacat 45382825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 14516738 - 14516681
Alignment:
Q  226 tttgtgaagggatgcctaccatggcggcgtcataggccacaatggcatgtttatatag 283  Q
    |||||||||||||||| ||||||| |||| |||| ||  ||||||| |||||||||||    
T  14516738 tttgtgaagggatgcccaccatggtggcgccataagctgcaatggcgtgtttatatag 14516681  T

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