View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21171_low_3 (Length: 477)
Name: NF21171_low_3
Description: NF21171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21171_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 4243590 - 4243321
Alignment:
| Q |
1 |
ataatgaatctaaaaagttcaatgtttttagtctaaaaacatttaaatttctaaatccttttggcttttattttgttacaaggagagtataatgaatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243590 |
ataatgaatctaaaaagttcaatgtttttagtctaaaaacatttaaatttctaaatccttttggcttttattttgttacaaggagagtataatgaatatt |
4243491 |
T |
|
| Q |
101 |
aaaaattgaacaacaaaaatacaaagatagcataacaaaagagaagacaatggaacggggaaacttcatttcatgttctccatgcgtcagtgttgtcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
4243490 |
aaaaattgaacaacaaaaatacaaagatagcataaaaaaagagaagacaatggaacggggaaacttcatttcatgttctccatgtgttagtgttgtcaaa |
4243391 |
T |
|
| Q |
201 |
ttgctctttaagacatggtggattatgtgtgaattatatccaccatgcctcttccatgggttgttttaatg |
271 |
Q |
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| T |
4243390 |
ttgctc-ttacgacatggtggattatgtgtgaattatatccaccatgcctcttccatgggttgttttaatg |
4243321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 311 - 457
Target Start/End: Complemental strand, 4243220 - 4243074
Alignment:
| Q |
311 |
acacttagatacatagttattgaatggattctaataaaaaagatgtaaaatgtactacctcataagtaacaatccttccttcccgatgaagggaggcaat |
410 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4243220 |
acacttagatacgtagttattgaatggattctaataaaaaagatgtaaaatgtactacctcataagtaacaatccttccttcccgatgaagggagacaat |
4243121 |
T |
|
| Q |
411 |
gcctaccaaaccatgagtagaaagaatggacatctctgtattagatc |
457 |
Q |
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| T |
4243120 |
gcctaccaaaccatgagcagaaagaatggacatctctgtattagatc |
4243074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 313 - 454
Target Start/End: Complemental strand, 4250327 - 4250184
Alignment:
| Q |
313 |
acttagatacat-agttattgaatggattctaataaaaaagatgtaaaat-gtactacctcataagtaacaatccttccttcccgatgaagggaggcaat |
410 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||| ||| |
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| T |
4250327 |
acttagatacattagttattgaatgtattctaataaaaaagaaccaaaaaagtactacctcataagtagcaatacttccttcccgatgaagggagataat |
4250228 |
T |
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| Q |
411 |
gcctaccaaaccatgagtagaaagaatggacatctctgtattag |
454 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
4250227 |
gcctaccaaatcatgagtagaaagaatggacatctcagtattag |
4250184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 55 - 232
Target Start/End: Complemental strand, 4250680 - 4250501
Alignment:
| Q |
55 |
atccttttggcttttattttgttacaaggagagtataatgaatattaaaaattgaacaaca---aaaatacaaagatagcataacaaaagagaagacaat |
151 |
Q |
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|
||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| | | |||||||||| | | | |||||||||||| ||||| |
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| T |
4250680 |
atccttttgacttttattttgttacaagaggagtatagtgaatattaaaaattgaaagaaagaaaaaatacaaacaccgtagaacaaaagagaatacaat |
4250581 |
T |
|
| Q |
152 |
ggaacggggaaacttcatttcatgttctccatgcgtcagtgttgtcaaattgctctttaagacatggtggattatgtgtga |
232 |
Q |
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|||||| ||||| ||||||||||| |||||| | ||| |||| |||||||||| | |||||||| |||||||||||||||| |
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| T |
4250580 |
ggaacgcggaaaattcatttcatgctctccacgtgtccgtgtcgtcaaattgcgc-ttaagacacggtggattatgtgtga |
4250501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 454
Target Start/End: Original strand, 3411141 - 3411276
Alignment:
| Q |
318 |
gatacatagttattgaatggattctaataaaaaagatgtaaaatgtactacctcataagtaacaatccttccttcccgatgaagggaggcaatgcctacc |
417 |
Q |
| |
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||||| |||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||| |||| | |||| |||||||||||| || |
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| T |
3411141 |
gatacttagttattgaatggatactaataaaag-gatggaaaatgtacaacctcataagtaacaatgactcctgattgttgaaaggaggcaatgccaact |
3411239 |
T |
|
| Q |
418 |
aaaccatgagtagaaagaatggacatctctgtattag |
454 |
Q |
| |
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||||| |||| ||||||||| | |||||||| |||| |
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| T |
3411240 |
aaaccctgagctgaaagaatgcatatctctgtgttag |
3411276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 3410736 - 3410828
Alignment:
| Q |
21 |
aatgtttttagtctaaaaacatttaaatttctaaatccttttggcttttattttgttacaaggagagtataatgaatattaaaaattgaacaa |
113 |
Q |
| |
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||||| ||||||||||||||| |||| ||| | |||| ||| |||||||||| | ||| || ||||||| ||||||||||||||||||||| |
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| T |
3410736 |
aatgtatttagtctaaaaacacttaattttttggatcccttttacttttattttatcacatggggagtatagtgaatattaaaaattgaacaa |
3410828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 454
Target Start/End: Complemental strand, 4812369 - 4812262
Alignment:
| Q |
347 |
aaaaagatgtaaaatgtactacctcataagtaacaatccttccttcccgatgaagggaggcaatgcctaccaaaccatgagtagaaagaatggacatctc |
446 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||||| ||| | ||| ||||| ||| |||| ||||||||||||| |||||||||| |||| || |
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| T |
4812369 |
aaaaggatgtaaaaagtactacctcgtaagtaacaacggaccctgactgataaagggcagcattgccaaccaaaccatgagcagaaagaatgcacatatc |
4812270 |
T |
|
| Q |
447 |
tgtattag |
454 |
Q |
| |
|
|||||||| |
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| T |
4812269 |
tgtattag |
4812262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 454
Target Start/End: Original strand, 14418285 - 14418421
Alignment:
| Q |
319 |
atacatagttattgaatggattctaataaaaa-agatgtaaaatgtactacctcataagtaacaatccttccttcccgatgaagggaggcaatgcctacc |
417 |
Q |
| |
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||||||||||||||| || ||||||||||||| | ||| |||| | ||||||||| || ||| ||| ||||| ||||||| | | || |||| || |
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| T |
14418285 |
atacatagttattgattgtattctaataaaaacatatgcaaaaaggactacctcacaaataaaaattcttccaggttgatgaagtgcgacagtgccaact |
14418384 |
T |
|
| Q |
418 |
aaaccatgagtagaaagaatggacatctctgtattag |
454 |
Q |
| |
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|||||||||| |||||||||| ||||||||||||||| |
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| T |
14418385 |
aaaccatgagcagaaagaatgcacatctctgtattag |
14418421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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