View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21171_low_5 (Length: 311)

Name: NF21171_low_5
Description: NF21171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21171_low_5
NF21171_low_5
[»] chr8 (1 HSPs)
chr8 (1-311)||(14230067-14230378)
[»] chr5 (2 HSPs)
chr5 (277-311)||(11596478-11596512)
chr5 (278-311)||(28296331-28296364)
[»] scaffold0571 (1 HSPs)
scaffold0571 (270-311)||(7685-7726)
[»] chr7 (1 HSPs)
chr7 (278-311)||(38134429-38134462)
[»] chr4 (3 HSPs)
chr4 (278-311)||(14465317-14465350)
chr4 (278-311)||(18513264-18513297)
chr4 (278-310)||(7012069-7012101)
[»] chr2 (3 HSPs)
chr2 (278-311)||(18570975-18571008)
chr2 (278-311)||(40681985-40682018)
chr2 (278-310)||(10535783-10535815)
[»] chr1 (1 HSPs)
chr1 (278-310)||(42325563-42325595)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 14230378 - 14230067
Alignment:
Q  1 aataaagacataaaaataatcaaagttgattaacatgaccaggtcaaatatggggctttgcaggcatagggtcaatgaattggttctcaaagaaggtaca 100  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14230378 aataaagacacgaaaataatcaaagtttattaacatgaccaggtcaaatatggggctttgcaggcatagggtcaatgaattggttctcaaagaaggtaga 14230279  T
Q  101 aaaaa-gacaaggatgaaaagacaatagagagacatttgaatcataaatcgtccccttcctaagcattgactttataatatgaaacatcatttggtaaaa 199  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  14230278 aaaaaagacaaggataaaaagacaatagagagacatttgaatcataaattgttcccttcctaagcattgacattataatataaaacatcatttggtaaaa 14230179  T
Q  200 taaggccatggtgcagatcaattagaacacgaattctggaaaacctatgaaacaccggcacagatacacgacatgggtaccgataatcatttgagaaaat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  14230178 taaggccatggtgcagatcaattagaacacgaattctggaaaacctatgaaacactggcacagacacacgacatgggtaccgataatcatttgagaaaat 14230079  T
Q  300 gacataattcaa 311  Q
    ||||||||||||    
T  14230078 gacataattcaa 14230067  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 11596512 - 11596478
Alignment:
Q  277 taccgataatcatttgagaaaatgacataattcaa 311  Q
    |||||||||| ||||||||||||||||||||||||    
T  11596512 taccgataataatttgagaaaatgacataattcaa 11596478  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 28296331 - 28296364
Alignment:
Q  278 accgataatcatttgagaaaatgacataattcaa 311  Q
    ||||||||| ||||||||||||||||||||||||    
T  28296331 accgataataatttgagaaaatgacataattcaa 28296364  T

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Target: scaffold0571 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 7685 - 7726
Alignment:
Q  270 acatgggtaccgataatcatttgagaaaatgacataattcaa 311  Q
    |||| ||||| |||||| ||||||||||||||||||||||||    
T  7685 acattggtactgataataatttgagaaaatgacataattcaa 7726  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 38134462 - 38134429
Alignment:
Q  278 accgataatcatttgagaaaatgacataattcaa 311  Q
    ||||||||| ||||||||||||||||||||||||    
T  38134462 accgataataatttgagaaaatgacataattcaa 38134429  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 14465350 - 14465317
Alignment:
Q  278 accgataatcatttgagaaaatgacataattcaa 311  Q
    ||||||||| ||||||||||||||||||||||||    
T  14465350 accgataataatttgagaaaatgacataattcaa 14465317  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 18513297 - 18513264
Alignment:
Q  278 accgataatcatttgagaaaatgacataattcaa 311  Q
    ||||||||| ||||||||||||||||||||||||    
T  18513297 accgataataatttgagaaaatgacataattcaa 18513264  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 7012069 - 7012101
Alignment:
Q  278 accgataatcatttgagaaaatgacataattca 310  Q
    ||||||||| |||||||||||||||||||||||    
T  7012069 accgataataatttgagaaaatgacataattca 7012101  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 18570975 - 18571008
Alignment:
Q  278 accgataatcatttgagaaaatgacataattcaa 311  Q
    ||||||||| ||||||||||||||||||||||||    
T  18570975 accgataataatttgagaaaatgacataattcaa 18571008  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 40681985 - 40682018
Alignment:
Q  278 accgataatcatttgagaaaatgacataattcaa 311  Q
    ||||||||| ||||||||||||||||||||||||    
T  40681985 accgataataatttgagaaaatgacataattcaa 40682018  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 10535815 - 10535783
Alignment:
Q  278 accgataatcatttgagaaaatgacataattca 310  Q
    ||||||||| |||||||||||||||||||||||    
T  10535815 accgataataatttgagaaaatgacataattca 10535783  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 42325563 - 42325595
Alignment:
Q  278 accgataatcatttgagaaaatgacataattca 310  Q
    ||||||||| |||||||||||||||||||||||    
T  42325563 accgataataatttgagaaaatgacataattca 42325595  T

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