View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21171_low_7 (Length: 235)
Name: NF21171_low_7
Description: NF21171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21171_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 8844348 - 8844127
Alignment:
| Q |
14 |
atcactaaactcagctattcttccatttctactctcacatttttcaaccaaagctttaactctttccaagctggctagttttccatcattgaagagtcat |
113 |
Q |
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| T |
8844348 |
atcactacactcagctattcttccatttctactctcacattttccaaccaaagctttaactctttccaagctggctagttttccatcattgaagagtcat |
8844249 |
T |
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| Q |
114 |
gagaaatgtggttttgttttcattcattcttttgtttgctcttctcatcttttgtgctaatagaaccatcaaaagtgaagaaagatcatggatagttaat |
213 |
Q |
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| T |
8844248 |
gagaaatgtggttttgttttcattcattcttttgtttgctcttctcatcttttgtgctaatagaaccatcaaaagtgaagaaagatcatggatagttaat |
8844149 |
T |
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| Q |
214 |
gaagcacaatctttttattacc |
235 |
Q |
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| T |
8844148 |
gaagcacaatctttttattacc |
8844127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 85 - 226
Target Start/End: Complemental strand, 8846503 - 8846365
Alignment:
| Q |
85 |
tggctagttttccatcattgaagagtcatgagaaatgtggtttt-gttttcattcattcttttgtttgctcttctcatcttttgtgctaatagaaccatc |
183 |
Q |
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| T |
8846503 |
tggctagctttccatcattaaag-gtcatgagaaacgtggtttttgttttcatacattcttttgtttgttcttctcatctttggtgttaatagaagtacc |
8846405 |
T |
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| Q |
184 |
aaaagtgaagaaagatcatggatagttaatgaagcacaatctt |
226 |
Q |
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| T |
8846404 |
aaaattgaggaatcatcatggatag---atgaagcacaatctt |
8846365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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