View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21172_high_10 (Length: 236)
Name: NF21172_high_10
Description: NF21172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21172_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43603192 - 43603417
Alignment:
| Q |
1 |
actatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaatgctattttgaca--gaatcttaggactaattttttctgtaat |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43603192 |
actatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaatgctattttgacaaagaatcttaggactaattttttctgtaat |
43603291 |
T |
|
| Q |
99 |
ccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggctgctgctattgttaattgcc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603292 |
ccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggctgctgctattgttaattgcc |
43603391 |
T |
|
| Q |
199 |
ttcctgcttgtacattcttctctgct |
224 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
43603392 |
ttcctgcttgtacattcttctttgct |
43603417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 224
Target Start/End: Original strand, 43609671 - 43609826
Alignment:
| Q |
70 |
agaatcttaggactaattttttctgtaatccttcttggttgctttt-cagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctg |
168 |
Q |
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|||||||||||||||||| ||| ||||||| ||||||||||||| |||| |||||||| ||||||||||||||||| |||| ||| ||| ||||||| |
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| T |
43609671 |
agaatcttaggactaattaggtctataatcctacttggttgctttttcagacttactttaactctgaatgtgcatggtgttgctctttcttatacttctg |
43609770 |
T |
|
| Q |
169 |
cttcgttggctgctgctattgttaattgccttcctgcttgtacattcttctctgct |
224 |
Q |
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|| | || ||| ||| ||||||||||| ||||| |||| |||||||||| |||| |
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| T |
43609771 |
ctatgctgtctggtgcaattgttaattgtcttccggcttcgacattcttctttgct |
43609826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 43616244 - 43616371
Alignment:
| Q |
97 |
atccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggctgctgctattgttaattg |
196 |
Q |
| |
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||||| ||| |||| ||||||||||||||||| || |||||||| |||||||||| |||| |||||| |||||| |||||||||||| |||||||| || |
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| T |
43616244 |
atcctactttgttgtttttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaactg |
43616343 |
T |
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| Q |
197 |
ccttcctgcttgtacattcttctctgct |
224 |
Q |
| |
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||||| |||| |||||||||| |||| |
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| T |
43616344 |
tcttccggcttcaacattcttctttgct |
43616371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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