View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21172_high_3 (Length: 342)

Name: NF21172_high_3
Description: NF21172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21172_high_3
NF21172_high_3
[»] chr4 (7 HSPs)
chr4 (1-342)||(42459918-42460256)
chr4 (6-75)||(11413628-11413697)
chr4 (138-216)||(23149422-23149502)
chr4 (239-295)||(23149517-23149573)
chr4 (163-219)||(11413503-11413559)
chr4 (1-75)||(23149301-23149375)
chr4 (11-75)||(898722-898786)
[»] chr8 (2 HSPs)
chr8 (148-219)||(37340760-37340831)
chr8 (6-70)||(37340890-37340954)
[»] chr3 (1 HSPs)
chr3 (9-71)||(27994109-27994171)
[»] chr7 (2 HSPs)
chr7 (16-75)||(13120960-13121019)
chr7 (249-298)||(28243316-28243365)
[»] chr6 (1 HSPs)
chr6 (1-75)||(12384389-12384463)
[»] chr1 (1 HSPs)
chr1 (237-289)||(17377903-17377955)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 42459918 - 42460256
Alignment:
Q  1 aaattgacctaattaacttgcatacataaggaatcagtactaaccttcaatttgatgtttattaaagcttcaaattttgggacctaattaacttgcatag 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  42459918 aaattgacctaattaacttgcatgcataaggaatcagtactaaccttcaatttgatgtttgttaaagcttcaaattttgggacctaattaacttgcatgg 42460017  T
Q  101 agtgattttgagcnnnnnnnctctaagttttttga---ttgtgcaattcaaattttgggataaag--gagagaaagtgaaaagttgaaaccgtaaaactg 195  Q
    |||||||||||||       |||||||||||   |   |||||||||||||||||||||| || |  ||||||||||||||||||||||| |||||||||    
T  42460018 agtgattttgagcaaaaaaactctaagttttgacagatttgtgcaattcaaattttgggaaaagggtgagagaaagtgaaaagttgaaactgtaaaactg 42460117  T
Q  196 tacaataggaggagtgattttcctnnnnnnnnnnnnnnnnncgaagcagttcagattacgtaatccgaattgcatttcgtatttttccaaattacgtaat 295  Q
    ||||||||||||||||||||||||                 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  42460118 tacaataggaggagtgattttcct--------tatatatatcgaagcagttcagattacgtaatccaaattgcatttcgtatttttccgaattacgtaat 42460209  T
Q  296 ccatataatattttgaaaaataacatagggcgcataaatatgagata 342  Q
     ||||  | |||||||||||||||| ||||||||| | |||||||||    
T  42460210 tcataggacattttgaaaaataacacagggcgcatgagtatgagata 42460256  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 11413697 - 11413628
Alignment:
Q  6 gacctaattaacttgcatacataaggaatcagtactaaccttcaatttgatgtttattaaagcttcaaat 75  Q
    |||||||||||||||||| ||||| || ||| |||||||||||| |||||||||| ||||||||||||||    
T  11413697 gacctaattaacttgcatgcataacgagtcactactaaccttcactttgatgtttgttaaagcttcaaat 11413628  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 23149422 - 23149502
Alignment:
Q  138 gtgcaattcaaattttgggataaaggaga--gaaagtgaaaagttgaaaccgtaaaactgtacaataggaggagtgatttt 216  Q
    |||||||||| |||||||||||| |||||  ||||||||||||||||||| |||||||| || ||| ||||| ||||||||    
T  23149422 gtgcaattcagattttgggataagggagagagaaagtgaaaagttgaaactgtaaaactttaaaatgggaggggtgatttt 23149502  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 23149517 - 23149573
Alignment:
Q  239 aagcagttcagattacgtaatccgaattgcatttcgtatttttccaaattacgtaat 295  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||  ||||||||||    
T  23149517 aagcagttcggattacgtaatccgagttgcatttcgtatttttcctgattacgtaat 23149573  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 11413559 - 11413503
Alignment:
Q  163 gagagaaagtgaaaagttgaaaccgtaaaactgtacaataggaggagtgattttcct 219  Q
    |||||| |||||||| ||||||| ||||||||||| ||||||||| |||||||||||    
T  11413559 gagagagagtgaaaatttgaaactgtaaaactgtaaaataggaggggtgattttcct 11413503  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 23149301 - 23149375
Alignment:
Q  1 aaattgacctaattaacttgcatacataaggaatcagtactaaccttcaatttgatgtttattaaagcttcaaat 75  Q
    |||| |||| ||| ||||||||| ||||||||||  | |||||| ||||||||||||||| |||||| |||||||    
T  23149301 aaatcgaccaaatcaacttgcatgcataaggaattcgaactaacattcaatttgatgtttgttaaagtttcaaat 23149375  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 898786 - 898722
Alignment:
Q  11 aattaacttgcatacataaggaatcagtactaaccttcaatttgatgtttattaaagcttcaaat 75  Q
    |||||||||||||   ||||||||  | ||||||||||||||||| ||||  |||||||||||||    
T  898786 aattaacttgcatgtgtaaggaattcgaactaaccttcaatttgacgtttgataaagcttcaaat 898722  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 37340831 - 37340760
Alignment:
Q  148 aattttgggataaaggagagaaagtgaaaagttgaaaccgtaaaactgtacaataggaggagtgattttcct 219  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||| ||||| |||||||||||    
T  37340831 aattttgggataagggagagaaagtgaaaagttaaaactgtaaaactgtaaaatgggaggggtgattttcct 37340760  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 37340954 - 37340890
Alignment:
Q  6 gacctaattaacttgcatacataaggaatcagtactaaccttcaatttgatgtttattaaagctt 70  Q
    |||||||||||||||||| |||||||||| ||||||||| |||| |||||||||| |||||||||    
T  37340954 gacctaattaacttgcatgcataaggaataagtactaacattcactttgatgtttgttaaagctt 37340890  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 27994109 - 27994171
Alignment:
Q  9 ctaattaacttgcatacataaggaatcagtactaaccttcaatttgatgtttattaaagcttc 71  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||| ||||    
T  27994109 ctaattaacttgcatgcataaggaatcaatactaaccttcactttgatgtttgttaaatcttc 27994171  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 13121019 - 13120960
Alignment:
Q  16 acttgcatacataaggaatcagtactaaccttcaatttgatgtttattaaagcttcaaat 75  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||  |||||||||||||    
T  13121019 acttgcatgcataaggaatttgaactaaccttcaatttgatgtttgataaagcttcaaat 13120960  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 28243316 - 28243365
Alignment:
Q  249 gattacgtaatccgaattgcatttcgtatttttccaaattacgtaatcca 298  Q
    |||||||||||||| | || |||||||||||||||  |||||||||||||    
T  28243316 gattacgtaatccggaatgtatttcgtatttttccggattacgtaatcca 28243365  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12384463 - 12384389
Alignment:
Q  1 aaattgacctaattaacttgcatacataaggaatcagtactaaccttcaatttgatgtttattaaagcttcaaat 75  Q
    |||||| ||| |||||||||||| ||||||||||  | | |||| |||||||||||||||  |||||||||||||    
T  12384463 aaattggccttattaacttgcatgcataaggaattcgaagtaactttcaatttgatgtttgataaagcttcaaat 12384389  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 17377955 - 17377903
Alignment:
Q  237 cgaagcagttcagattacgtaatccgaattgcatttcgtatttttccaaatta 289  Q
    ||||| |||||||||||||||||||| | || ||||||||||||||| |||||    
T  17377955 cgaagaagttcagattacgtaatccggaatgtatttcgtatttttccgaatta 17377903  T

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