View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21172_high_5 (Length: 295)
Name: NF21172_high_5
Description: NF21172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21172_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 24142573 - 24142840
Alignment:
| Q |
10 |
gcagagaggcaggttgcgcacccttttagtaaaaggggacatggaaatatgaatggggaatggtcgtcacagacaggtgtgtcccagataatggagccta |
109 |
Q |
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| T |
24142573 |
gcagagaggtaggttgcgcacccttttagtaaaagggggaatgggaatatgagtggggaatggtcgtcacagacaggtgcgtcccaaataatggagccta |
24142672 |
T |
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| Q |
110 |
tacagcagtatgaggaggaacctcactaccactctactcaggagcattacgagcaacttcagtatgaggagctatctcaagaggaggagagtgaggttga |
209 |
Q |
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| T |
24142673 |
tacagcattatgagg---aacctcactaccactctgctcaggagcactacgagcaacttcagtatgaggagctagctcaagaggaggagagtgaggttga |
24142769 |
T |
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| Q |
210 |
gtttgagcctaagcagcaggggcaccagaagttgcactcagaccagggggttttccttagaggcttagtga |
280 |
Q |
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| T |
24142770 |
ggttgagcctaagcagcaggggcaccagaagttgcactcagaccagagggttttcctcggatgcttagtga |
24142840 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 27663188 - 27663097
Alignment:
| Q |
106 |
cctatacagcagtatgaggaggaacctcactaccactctactcaggagcattacgagcaacttcagtatgaggagctatctcaagaggagga |
197 |
Q |
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| T |
27663188 |
cctacacaacagtatgaggaggactctcactaccacattgctcatgagcacaacgagcagcctcagtatgagcagccgtctcaagaggagga |
27663097 |
T |
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