View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21172_low_2 (Length: 443)
Name: NF21172_low_2
Description: NF21172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21172_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 41592299 - 41591887
Alignment:
| Q |
19 |
cacagatcagatatagagaaatgaatatttgccatggtcaccaacagagccatgttcacacctgatgtgtcaccacgctgcacacacgtgaacgttgtag |
118 |
Q |
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| T |
41592299 |
cacagatcagatacagagaaatgaatatctgccatggtcaccaacagagccatgttcacacctgatgtgtcaccacgctgcacacacgtgaacgttgtag |
41592200 |
T |
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| Q |
119 |
cggagccttaagaatatccatcactcggacacacatgttaggctcaaaactgagcatt-------ttgtttttcataaatacaagtgtctatagcgaccg |
211 |
Q |
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| T |
41592199 |
ctgagccttaagaatatccatcactcggacacacatgttaggctcaaaactgagcattctgcattttgtttttcataaatacaagtgtctatagcgaccg |
41592100 |
T |
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| Q |
212 |
aaggcctagggcaatgaagtattgtggttttaggtactnnnnnnnggtatccttaacactcgaatcctaattcaacttcttattttcctttatatctctc |
311 |
Q |
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| T |
41592099 |
aaggcctagggcaatgaagtattgtggttttaggtactaaagaaaggtatccttaacactcgaatcctaattcaacttcttattttcctttatatctctc |
41592000 |
T |
|
| Q |
312 |
ttcttatcggatcactctctccatttctttatccatcaaggtgtatatcaggtatatgagtttccaaatattacaggtttaagaattcaattagttagag |
411 |
Q |
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| T |
41591999 |
ttcttatcggatcactctctccatttctttatccatcaaggtgtatatcaggtatatgagtttccaaatattacaggtttaagaattcaattagttagag |
41591900 |
T |
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| Q |
412 |
aaaccctagttta |
424 |
Q |
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| T |
41591899 |
aaaccctagttta |
41591887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 41585877 - 41585782
Alignment:
| Q |
148 |
cacacatgttaggctcaaaactgagcattttgtttttcataaatacaagtgtctatagcgaccgaaggcctagggcaatgaagtattgtggttttag |
244 |
Q |
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| T |
41585877 |
cacacatgttgggctcaaat-tgaacatttcattttccataagtacaagtgtctatggcgactaaaggcctgggccaataaactattgtggttttag |
41585782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 424
Target Start/End: Original strand, 10116138 - 10116181
Alignment:
| Q |
380 |
tattacaggtttaagaattcaattagttagagaaaccctagttta |
424 |
Q |
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| T |
10116138 |
tattagaggtttaagaattcagttagttaga-aaaccctagttta |
10116181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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