View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21172_low_5 (Length: 295)
Name: NF21172_low_5
Description: NF21172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21172_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 24142573 - 24142840
Alignment:
| Q |
10 |
gcagagaggcaggttgcgcacccttttagtaaaaggggacatggaaatatgaatggggaatggtcgtcacagacaggtgtgtcccagataatggagccta |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
24142573 |
gcagagaggtaggttgcgcacccttttagtaaaagggggaatgggaatatgagtggggaatggtcgtcacagacaggtgcgtcccaaataatggagccta |
24142672 |
T |
|
| Q |
110 |
tacagcagtatgaggaggaacctcactaccactctactcaggagcattacgagcaacttcagtatgaggagctatctcaagaggaggagagtgaggttga |
209 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24142673 |
tacagcattatgagg---aacctcactaccactctgctcaggagcactacgagcaacttcagtatgaggagctagctcaagaggaggagagtgaggttga |
24142769 |
T |
|
| Q |
210 |
gtttgagcctaagcagcaggggcaccagaagttgcactcagaccagggggttttccttagaggcttagtga |
280 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||| |
|
|
| T |
24142770 |
ggttgagcctaagcagcaggggcaccagaagttgcactcagaccagagggttttcctcggatgcttagtga |
24142840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 27663188 - 27663097
Alignment:
| Q |
106 |
cctatacagcagtatgaggaggaacctcactaccactctactcaggagcattacgagcaacttcagtatgaggagctatctcaagaggagga |
197 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||| | |||| ||||| ||||||| | |||||||||| ||| |||||||||||||| |
|
|
| T |
27663188 |
cctacacaacagtatgaggaggactctcactaccacattgctcatgagcacaacgagcagcctcagtatgagcagccgtctcaagaggagga |
27663097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University