View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21172_low_6 (Length: 279)

Name: NF21172_low_6
Description: NF21172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21172_low_6
NF21172_low_6
[»] chr8 (2 HSPs)
chr8 (23-222)||(4509151-4509350)
chr8 (222-259)||(4509338-4509375)
[»] chr2 (1 HSPs)
chr2 (118-187)||(43435195-43435264)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 4509151 - 4509350
Alignment:
Q  23 cacagacccatcagcattgcatggagacaagtaatgtttctagttccacggtggctgacattgatgataatcccaccattgccggcagtgttcgggatgt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4509151 cacagacccatcagcattgcatggagacaagtaatgtttctagttccacggtggctgacattgatgataatcccaccattgccggcggtgttcgggatgt 4509250  T
Q  123 ttatggtgaggatagagccactgaggatcagtttgttactccttggagtgttactgttgctaggtgtgttatgtgacttgtaatttgtaatcataatcat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4509251 ttatggtgaggatagagccactgaggatcagtttgttactccttggagtgttactgttgctaggtgtgttatgtgacttgtaatttgtaatcataatcat 4509350  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 4509338 - 4509375
Alignment:
Q  222 taatcataatcatcatattcatattgtaacgtagcttt 259  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4509338 taatcataatcatcatattcatattgtaacgtagcttt 4509375  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 43435264 - 43435195
Alignment:
Q  118 gatgtttatggtgaggatagagccactgaggatcagtttgttactccttggagtgttactgttgctaggt 187  Q
    ||||||||||| |||||||  |||||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  43435264 gatgtttatggcgaggataaggccactgaggatcactttgtgactccttggagtgtttctgttgctaggt 43435195  T

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