View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21172_low_7 (Length: 272)
Name: NF21172_low_7
Description: NF21172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21172_low_7 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 49865889 - 49866160
Alignment:
| Q |
1 |
ttctcaaatccatataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaatttttctaatatcaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49865889 |
ttctcaaatccatataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaatttttctaatatcaaatt |
49865988 |
T |
|
| Q |
101 |
tatccaatgtgtgaatagattgatgaatatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagctaa |
200 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49865989 |
tatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagctaa |
49866088 |
T |
|
| Q |
201 |
ttccttgtagagttttgagctatggatttgtttcgagagttcttcagctgttgctttgaatactgctttgat |
272 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49866089 |
ttccttgtagagttttgagttatggatttgtttcgagagttcttcagctgttgctttgaatactgctttgat |
49866160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 49871820 - 49872080
Alignment:
| Q |
1 |
ttctcaaatccatataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaatttttctaatatcaaatt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
49871820 |
ttctcaaatccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaatt |
49871919 |
T |
|
| Q |
101 |
tatccaatgtgtgaatagattgatgaatatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagctaa |
200 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49871920 |
tatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagccaa |
49872019 |
T |
|
| Q |
201 |
ttccttgtagagttttgagctatggatttgtttcgagagttcttcagctgttgctttgaat |
261 |
Q |
| |
|
||||||||||||| ||||| | || ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
49872020 |
ttccttgtagagtgttgagttgtgtatttgtttcacgagttcttcagctgttgcattgaat |
49872080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University