View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21172_low_9 (Length: 237)
Name: NF21172_low_9
Description: NF21172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21172_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 49865761 - 49865541
Alignment:
| Q |
1 |
acaagtgttttgaaaaataataggaagcatttgtctgaagatggtttgccatcatgggtttctcaaagccaaaggaaacttctcgcggctcctgagaacg |
100 |
Q |
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| T |
49865761 |
acaagtgttttgaataataataggaagcatttgtctgaagatggtttgccatcatgggtttctcaaagccaaaggaaacttctcgcggctcctgagaacg |
49865662 |
T |
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| Q |
101 |
ttaagcctgatgctgttgttgctcaagatggtagtggtcaatttaagacattgactgaggcacttgcacttgttcccaagaagaaccaagttccttttgt |
200 |
Q |
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| T |
49865661 |
ttaagcctaatgctgttgttgcacaagatggtagtggtcaatttaagacattgactgaggcacttgcactagttcccaagaaaaaccaagttccttttgt |
49865562 |
T |
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| Q |
201 |
tattcatgttaaggctggtat |
221 |
Q |
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| T |
49865561 |
tattcatgttaaggctggtat |
49865541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 49871691 - 49871472
Alignment:
| Q |
2 |
caagtgttttgaaaaataataggaagcatttgtctgaagatggtttgccatcatgggtttctcaaagccaaaggaaacttctcgcggctcctgagaacgt |
101 |
Q |
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| T |
49871691 |
caagtgctttgaataataataggaagcttttgtctgaagatggtttaccatcatgggtttctcaaagtcaaaggaaacttcttgcggctcctcagaacgt |
49871592 |
T |
|
| Q |
102 |
taagcctgatgctgttgttgctcaagatggtagtggtcaatttaagacattgactgaggcacttgcacttgttcccaagaagaaccaagttccttttgtt |
201 |
Q |
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| T |
49871591 |
taagcctaacgttgttgttgcacaagatggtagtggtcaatttaagactttgactgaggcacttgcaactgttcccaagaagaacaaagttccttttgtt |
49871492 |
T |
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| Q |
202 |
attcatgttaaggctggtat |
221 |
Q |
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| T |
49871491 |
attcatgttaaggctggtat |
49871472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 13977121 - 13977172
Alignment:
| Q |
107 |
ctgatgctgttgttgctcaagatggtagtggtcaatttaagacattgactga |
158 |
Q |
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| T |
13977121 |
ctgatgctgttgtggctcaagatgggagtggacagtttaagacattaactga |
13977172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 13966956 - 13967004
Alignment:
| Q |
110 |
atgctgttgttgctcaagatggtagtggtcaatttaagacattgactga |
158 |
Q |
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| T |
13966956 |
atgctgttgtggctcaagatgggagtggacagtttaagacattaactga |
13967004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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