View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21173_high_1 (Length: 440)
Name: NF21173_high_1
Description: NF21173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21173_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 54702184 - 54701770
Alignment:
| Q |
17 |
accactgactcattcataggggaaaactaccttgatctaaatggtaataaagatgacatttattccnnnnnnnn-tatacaagatttttaatgtgttgac |
115 |
Q |
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| T |
54702184 |
accactgactcattcataggggaaa-ctaccttgatctaaatggtaataaagatgacatttattccaaaaaaaaatatacaagatttttaatgtgttgac |
54702086 |
T |
|
| Q |
116 |
cacaagattttctttgagaccacaagagtgttgaccacttgctctgctttaatcaaccacaaagactctaatgagttaactgtgaaatcttcggcttctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
54702085 |
cacaagattttctttgagaccacaagagtgttgaccacttgctctgctttaatcaaccacacagactctaatgagttaactgtgacatcttgggcttctt |
54701986 |
T |
|
| Q |
216 |
tcaagatcgaaaaagtttccatgtctttgtttgcggaagaaaagaaactgtggactcatttttcattgctttcaagtttccaagtgcctttgcaatagct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54701985 |
tcaagatcgaaaaagtttccatgtctttgtttgcggaagaaaagaaactgtggactcatttttcattgctttcaagtttccaagtgcctctgcaatagct |
54701886 |
T |
|
| Q |
316 |
ttcttcatcttcttcctatatgacaagtattttccttccaccctcaactgtgattccactttccacagctctcctcctgagaataactgaccgtagttca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54701885 |
ttcttcatcttcttcctatatgacaagtattttccttccaccctcaactgtgattccactttccacagctctcctcctgagaataactgaccttagttca |
54701786 |
T |
|
| Q |
416 |
tgcatgatatcctttg |
431 |
Q |
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|||||||||||||||| |
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| T |
54701785 |
tgcatgatatcctttg |
54701770 |
T |
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