View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21173_low_1 (Length: 476)
Name: NF21173_low_1
Description: NF21173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21173_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 332 - 460
Target Start/End: Complemental strand, 37653644 - 37653516
Alignment:
| Q |
332 |
aagctttggtgaagagtgctccttggccaaatgtggaagaatgatcggctgcgttgacaccgatggtgatggcagaattgatttctatgaatttagaatc |
431 |
Q |
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| T |
37653644 |
aagctttggtgaagagtgctccttggccaaatgtggaagaatgataggctgcgttgacaccgatggtgatggcagaattgatttcgatgaatttagaatc |
37653545 |
T |
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| Q |
432 |
atgatgatggacatgtagttcttccctct |
460 |
Q |
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| T |
37653544 |
atgatgatggacatgtagttcttccctct |
37653516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 57 - 440
Target Start/End: Complemental strand, 37655757 - 37655371
Alignment:
| Q |
57 |
ttggaattggagatgggaaaaatcttcaagaaattggagaccaaagaaggtgacggcaaggtctcgatatctgatctaagagcgataatgggaaagttgg |
156 |
Q |
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| T |
37655757 |
ttggaatcggagatggaaaaactcttcaagaaattggacac---agacggtgatggcaagatatcgatctcagatctgagatcgataacaggaaagttag |
37655661 |
T |
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| Q |
157 |
gtataggagatgatgttgacg------aaggaggatttatcacactccaagagtttattgagctaagcaccacgaaatctgaaactgaagaggacataga |
250 |
Q |
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| T |
37655660 |
aaataggagatgacgttgatggcattgatggaggatctatcacgcttcaagagtttattgagctaagcacaacaagctatgaatctgaagaggaaataga |
37655561 |
T |
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| Q |
251 |
aaacataaaaaacgcctttgatgtttttgacattgatggtgacggtttcatcaccgtggaggagctcaatacggttatgaaaagctttggtgaagagtgc |
350 |
Q |
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| T |
37655560 |
aaacctaaagagcacgttttctgtgtatgacattgatggcgatggtttcatcacggcgaaggagcttaacacgcttatgagaagcattggtcaagagtgt |
37655461 |
T |
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| Q |
351 |
tccttggccaaatgtggaagaatgatcggctgcgttgacaccgatggtgatggcagaattgatttctatgaatttagaatcatgatgatg |
440 |
Q |
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| T |
37655460 |
tccttggatgaatgtgaaagaattattggtcgcgttgatagtgatggtgatggtaggattgattttgaggattttagaatcatgatgatg |
37655371 |
T |
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