View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21173_low_3 (Length: 424)
Name: NF21173_low_3
Description: NF21173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21173_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 8459021 - 8458630
Alignment:
| Q |
19 |
catcatgttaattgatgacagtaacagattattccaattgtcgcgctggattccgataatcttgtgcatctctaacctatctgatatgacttccataatc |
118 |
Q |
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| T |
8459021 |
catcatgttaattgatgacagtaaaagattattccaattgtcgcgctggattccgataatcttgtgcatctctaacctatctgatatgacttccataatc |
8458922 |
T |
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| Q |
119 |
aaatgaagcttaacaacttcctttgaattttggttagatgctattgaactgttgttgactttggagttgtatggatcgtcctttattttgtaattattta |
218 |
Q |
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| T |
8458921 |
aaatgaagcttaacaacttcctttgaattttggttagatgctattgaactgttgttgactttggagttgtatggatcatcctttattttgtaattattta |
8458822 |
T |
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| Q |
219 |
cataattcaattctgccaccaaagatctattaggaagccttggaatggaaaatttggtcagctgaatcttctgcaccttgtttcttgctgaaattcctct |
318 |
Q |
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| T |
8458821 |
cataattcaattctgccaccaaagatctattaggaagccttggaatggaaaatttggtcagctgaatcttctgcaccttgtttcttgctgaaattcctct |
8458722 |
T |
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| Q |
319 |
tgtattacaataacaaaaagaagaaattctatctgaaatcaaagatttttccatgtgctatagtatcaaatgtgtgtcagtatttaattata |
410 |
Q |
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| T |
8458721 |
tgtattacaataacaaaaagaagaaattctatctgaaatcaaagatttttccatgtgctatagtatcaaatgtgtgtcagtatttaattata |
8458630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 1618097 - 1618009
Alignment:
| Q |
252 |
gaagccttggaatggaaaatttggtcagctgaatcttctgcaccttgtttcttgctgaaattcctcttgtattacaataacaaaaagaagaa |
343 |
Q |
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| T |
1618097 |
gaaggcttggaatggagaatttggatagctgaatctt---caccgtgtttcttgtagaaattcttcctctatgacaataagaaaaagaagaa |
1618009 |
T |
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