View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21174_high_4 (Length: 424)

Name: NF21174_high_4
Description: NF21174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21174_high_4
NF21174_high_4
[»] chr3 (3 HSPs)
chr3 (7-265)||(8255467-8255723)
chr3 (144-231)||(28511441-28511528)
chr3 (144-231)||(28482629-28482716)
[»] chr4 (3 HSPs)
chr4 (144-243)||(38348490-38348589)
chr4 (146-243)||(48480507-48480604)
chr4 (144-236)||(26487852-26487944)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 8255723 - 8255467
Alignment:
Q  7 gtgagatgaaatctaatggacaagaaaagagttttcctttgtttccacatttaagtggtatattttcttgggtaaagtattcnnnnnnnnnnnnnnnata 106  Q
    |||| |||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||                |||    
T  8255723 gtgaaatgaaatctaatggacaagaaaagagtttttccttctttccacatttaagtggtatattttcttgggtaaagtatt--ttttttttctttttata 8255626  T
Q  107 aatatacgaactttttattttaatctctttnnnnnnnttcttcaacttttagattctcaaaagttttccatcaccacttttgatacctccgtttaagtca 206  Q
    ||||||||||||||| |||||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8255625 aatatacgaacttttcattttaatctctctaaaaaaattcttcaacttttagattctcaaaagttttccatcaccacttttgatacctccgtttaagtca 8255526  T
Q  207 attaatatgtagacatcatattttttaataaacttttttaggaatgtctagaatactat 265  Q
    |||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  8255525 attaatgtgtagacatcatattttttaataaactttttcagaaatgtctagaatactat 8255467  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 28511441 - 28511528
Alignment:
Q  144 ttcttcaacttttagattctcaaaagttttccatcaccacttttgatacctccgtttaagtcaattaatatgtagacatcatattttt 231  Q
    |||||||||||||||  ||| |||| |||||||||  |||||||| | ||||| || |||| |||| ||||||||| |||||||||||    
T  28511441 ttcttcaacttttagtctctaaaaaattttccatcttcacttttggtccctcctttaaagtaaattcatatgtagaaatcatattttt 28511528  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 28482629 - 28482716
Alignment:
Q  144 ttcttcaacttttagattctcaaaagttttccatcaccacttttgatacctccgtttaagtcaattaatatgtagacatcatattttt 231  Q
    |||||||||||||||  ||| |||| |||||||||  |||||||| |  |||| || |||| |||| ||||||||| |||||||||||    
T  28482629 ttcttcaacttttagtctctaaaaatttttccatcttcacttttggtcactcctttaaagtaaattcatatgtagaaatcatattttt 28482716  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 38348490 - 38348589
Alignment:
Q  144 ttcttcaacttttagattctcaaaagttttccatcaccacttttgatacctccgtttaagtcaattaatatgtagacatcatattttttaataaactttt 243  Q
    ||||||||||||||| | || |||| |||||||||  |||||||| || |||| || |||| || | |||||||||  |||||||||| |||||| ||||    
T  38348490 ttcttcaacttttagctcctaaaaaattttccatcttcacttttggtatctcctttaaagtaaacttatatgtagaattcatatttttgaataaaatttt 38348589  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 48480604 - 48480507
Alignment:
Q  146 cttcaacttttagattctcaaaagttttccatcaccacttttgatacctccgtttaagtcaattaatatgtagacatcatattttttaataaactttt 243  Q
    |||||||||||||| ||| ||||||||| ||||  |||||||| | ||| | || |||| || | |||||||||  |||||||||| |||||| ||||    
T  48480604 cttcaacttttagactctaaaaagtttttcatcttcacttttggtcccttctttaaagtaaactcatatgtagaattcatatttttgaataaaatttt 48480507  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 26487852 - 26487944
Alignment:
Q  144 ttcttcaacttttagattctcaaaagttttccatcaccacttttgatacctccgtttaagtcaattaatatgtagacatcatattttttaata 236  Q
    ||||||||||||||| | || ||||  ||||||||  |||||||| | ||||| || |||| || | |||||||||  |||||||||||||||    
T  26487852 ttcttcaacttttagttcctaaaaaaatttccatcttcacttttggtccctcctttaaagtaaactcatatgtagatttcatattttttaata 26487944  T

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