View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21174_high_5 (Length: 357)

Name: NF21174_high_5
Description: NF21174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21174_high_5
NF21174_high_5
[»] chr4 (7 HSPs)
chr4 (7-262)||(36912562-36912815)
chr4 (203-334)||(31389124-31389253)
chr4 (202-259)||(9521879-9521936)
chr4 (204-264)||(23499433-23499493)
chr4 (307-341)||(36912817-36912851)
chr4 (202-302)||(8258840-8258939)
chr4 (202-302)||(8272258-8272357)
[»] chr6 (5 HSPs)
chr6 (198-302)||(14536123-14536227)
chr6 (202-306)||(5736388-5736492)
chr6 (202-306)||(14518629-14518731)
chr6 (232-297)||(20678119-20678184)
chr6 (218-306)||(28754760-28754847)
[»] chr1 (2 HSPs)
chr1 (199-334)||(51672465-51672598)
chr1 (209-288)||(18280460-18280539)
[»] chr7 (8 HSPs)
chr7 (204-334)||(37757443-37757572)
chr7 (204-334)||(37763191-37763320)
chr7 (199-334)||(38603013-38603147)
chr7 (202-258)||(30969761-30969817)
chr7 (199-266)||(19267362-19267429)
chr7 (202-288)||(34383323-34383410)
chr7 (202-296)||(14809266-14809359)
chr7 (202-296)||(15256261-15256354)
[»] chr8 (1 HSPs)
chr8 (204-294)||(39421524-39421614)
[»] chr2 (2 HSPs)
chr2 (202-290)||(1070700-1070788)
chr2 (207-306)||(3143194-3143293)
[»] chr5 (5 HSPs)
chr5 (199-328)||(18345704-18345832)
chr5 (209-306)||(6233786-6233882)
chr5 (209-248)||(1815573-1815612)
chr5 (209-297)||(29815329-29815416)
chr5 (246-306)||(29822526-29822586)
[»] chr3 (2 HSPs)
chr3 (198-298)||(41417151-41417252)
chr3 (208-258)||(39736684-39736734)
[»] scaffold0352 (1 HSPs)
scaffold0352 (216-297)||(14115-14196)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 36912562 - 36912815
Alignment:
Q  7 cactgcattcaatttgggaggttatttagagggaagtgagcaaggagagttggacatttctcaggttatttggagcgttgttgtgtgagttcattgacca 106  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36912562 cactgcattcaatttgggaggttatttagagggaagtgggcaaggagagttggacatttctcaggttatttggagcgttgttgtgtgagttcattgacca 36912661  T
Q  107 ttgaggaatcaaattatttagggatggtgtgactgactgtaatgaggctatttctcaggttaaaacaacttcttggag-ttggtttgtgtttcgagtaaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36912662 ttgaggaatcaaattatttagggatggtgtgactgactgtaatgaggccatttctcaggttaaaacaacttcttggagtttggtttgtgtttcgagtaaa 36912761  T
Q  206 gtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagat 262  Q
    |||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36912762 gtg---agtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagat 36912815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 334
Target Start/End: Original strand, 31389124 - 31389253
Alignment:
Q  203 aaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaatt 302  Q
    ||||||||||||||| ||||||| | |||||||   || ||||||||||||||||| ||||||| |  |||||||||  || ||||||||||||||   |    
T  31389124 aaagtgtaaagtgagcaaatcaagggttgttatttaaataaactcatgatttgttaggatgtacctacaatatctac-cttgatttattaattaactgct 31389222  T
Q  303 gataattatctactttacactctaaaatgagt 334  Q
    ||| |||||  ||||||||||||||| |||||    
T  31389223 gat-attattcactttacactctaaagtgagt 31389253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 9521936 - 9521879
Alignment:
Q  202 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaa 259  Q
    |||||||||||||||||||||||||| |||| |   ||||||||||||||||||||||    
T  9521936 taaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgatttgttaa 9521879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 23499493 - 23499433
Alignment:
Q  204 aagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgt 264  Q
    ||||||||||||||||||| || | |||||||  ||||||||||||||||||||| |||||    
T  23499493 aagtgtaaagtgagaaaattaagggttgttattttaacaaactcatgatttgttatgatgt 23499433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 36912817 - 36912851
Alignment:
Q  307 attatctactttacactctaaaatgagtagttcat 341  Q
    |||||||||||||||||||||||||||||||||||    
T  36912817 attatctactttacactctaaaatgagtagttcat 36912851  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 8258840 - 8258939
Alignment:
Q  202 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaat 301  Q
    ||||| ||||| ||||||| |||||| ||||||| ||||||| ||||| |||| ||| ||| | | |  |||||||||||||||||| |||||| |||||    
T  8258840 taaagggtaaaatgagaaa-tcaaaggttgttattgtaacaagctcataattttttacgatatgcctacaatatctacatttaatttgttaattgacaat 8258938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 8272258 - 8272357
Alignment:
Q  202 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaat 301  Q
    ||||| ||||| ||||||| |||||| ||||||| ||||||| ||||| |||| ||| ||| | | |  |||||||||||||||||| |||||| |||||    
T  8272258 taaagggtaaaatgagaaa-tcaaaggttgttattgtaacaagctcataattttttacgatatgcctacaatatctacatttaatttgttaattgacaat 8272356  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 198 - 302
Target Start/End: Original strand, 14536123 - 14536227
Alignment:
Q  198 cgagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaa 297  Q
    ||||| |||||||||||||||||||||||| ||||||| | ||||||||| |||||||||| ||||||| |  ||||||||| |||||||| ||||||||    
T  14536123 cgagtgaagtgtaaagtgagaaaatcaaaggttgttattgcaacaaactcgtgatttgttatgatgtacctacaatatctacctttaattttttaattaa 14536222  T
Q  298 caatt 302  Q
    |||||    
T  14536223 caatt 14536227  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 202 - 306
Target Start/End: Original strand, 5736388 - 5736492
Alignment:
Q  202 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaat 301  Q
    |||||||||||||||||||||||| | ||||||| |||| ||| | ||||||||||| ||||| ||| | |||||||| |||||||| |||||||| | |    
T  5736388 taaagtgtaaagtgagaaaatcaatggttgttattgtaagaaattaatgatttgttatgatgtgcatatcatatctacttttaatttgttaattaatagt 5736487  T
Q  302 tgata 306  Q
    |||||    
T  5736488 tgata 5736492  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 202 - 306
Target Start/End: Original strand, 14518629 - 14518731
Alignment:
Q  202 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaat 301  Q
    ||||||||||||||||||||||||  ||||||||  ||| ||||||||||||||||| ||||||| |  ||||||  | |||||||| | |||||||| |    
T  14518629 taaagtgtaaagtgagaaaatcaagaattgttattataagaaactcatgatttgttatgatgtacctacaatatc--cctttaatttttaaattaacagt 14518726  T
Q  302 tgata 306  Q
    |||||    
T  14518727 tgata 14518731  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 20678119 - 20678184
Alignment:
Q  232 ttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaa 297  Q
    ||||| ||||||||| | ||||||||| || |||||||  ||||||||||||| ||| ||||||||    
T  20678119 ttatcataacaaacttaagatttgttatgacgtacatgcgatatctacatttattttgttaattaa 20678184  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 28754760 - 28754847
Alignment:
Q  218 aaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaattgata 306  Q
    ||||||||||  |||||| |||||| || ||||||||||||  |||||| | || ||||||  |||||||| |||||||||| ||||||    
T  28754760 aaaatcaaaggatgttattgtaacacacccatgatttgttataatgtacttatagtatcta-ttttaatttgttaattaacagttgata 28754847  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 334
Target Start/End: Original strand, 51672465 - 51672598
Alignment:
Q  199 gagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaac 298  Q
    |||| |||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||  || ||||||||| |||||||| |||||||||    
T  51672465 gagttaagtgtaacgtgagaaaatcaaaggttgttattgtatcaaactcatgatttgttatgatgtatctgcaatatctac-tttaatttgttaattaac 51672563  T
Q  299 aattgataattatctactttacactctaaaatgagt 334  Q
      ||||| ||| || ||||||||||||||| |||||    
T  51672564 ggttgat-attgtccactttacactctaaagtgagt 51672598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 18280539 - 18280460
Alignment:
Q  209 taaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaattt 288  Q
    ||||||||||||||||| | ||||||| |||||| | | ||||||||||| ||||||| |  ||||| ||| ||||||||    
T  18280539 taaagtgagaaaatcaagggttgttattgtaacatatttatgatttgttatgatgtacttacaatatttacctttaattt 18280460  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 37757572 - 37757443
Alignment:
Q  204 aagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaattg 303  Q
    |||||||||| ||||||||||||| |||||||  |||||||||||||| ||||||  |||||| |  ||||||||| ||| |||| ||||||||| ||||    
T  37757572 aagtgtaaagcgagaaaatcaaaggttgttattttaacaaactcatgacttgttataatgtacctacaatatctacctttgattttttaattaacgattg 37757473  T
Q  304 ataattatctactttacactctaaaatgagt 334  Q
    || |||||  ||||||||||||||| |||||    
T  37757472 at-attattcactttacactctaaagtgagt 37757443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 37763320 - 37763191
Alignment:
Q  204 aagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaattg 303  Q
    |||||||||| ||||||||||||| |||||||  |||||||||||||| ||||||  |||||| |  ||||||||| ||| |||| ||||||||| ||||    
T  37763320 aagtgtaaagcgagaaaatcaaaggttgttattttaacaaactcatgacttgttataatgtacctacaatatctacctttgattttttaattaacgattg 37763221  T
Q  304 ataattatctactttacactctaaaatgagt 334  Q
    || |||||  ||||||||||||||| |||||    
T  37763220 at-attattcactttacactctaaagtgagt 37763191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 334
Target Start/End: Original strand, 38603013 - 38603147
Alignment:
Q  199 gagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaac 298  Q
    |||| ||||||||||  |||||||||| | |||||||  |||||||||||||||||||||  |||||| |  ||||||||| ||| |||| |||||||||    
T  38603013 gagtgaagtgtaaagcaagaaaatcaagggttgttattttaacaaactcatgatttgttataatgtacctacaatatctacctttgattttttaattaac 38603112  T
Q  299 aattgataattatctactttacactctaaaatgagt 334  Q
      ||||| |||||  ||||||||||||||| |||||    
T  38603113 ggttgat-attattcactttacactctaaagtgagt 38603147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 30969761 - 30969817
Alignment:
Q  202 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgtta 258  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgatttgtta 30969817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 19267429 - 19267362
Alignment:
Q  199 gagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtac 266  Q
    |||||||||||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||||    
T  19267429 gagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgatttgttatgatgtac 19267362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 34383410 - 34383323
Alignment:
Q  202 taaagtgtaaagtgagaaaa-tcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaattt 288  Q
    |||||| |||| |||||||| ||||| ||||| || |||||||||||||||||||||| ||| ||||   ||||||||| ||||||||    
T  34383410 taaagtttaaaatgagaaaaatcaaatattgtcattgtaacaaactcatgatttgttatgatatacacacaatatctacttttaattt 34383323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 14809266 - 14809359
Alignment:
Q  202 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaatta 296  Q
    |||| |||||||| ||||||| |||| || |||  |||||||||||||||||| | || |||||| |  |||||||||||||| ||| |||||||    
T  14809266 taaaatgtaaagtaagaaaattaaag-ttcttagtgtaacaaactcatgatttatcaaaatgtacttacaatatctacatttagtttgttaatta 14809359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 15256261 - 15256354
Alignment:
Q  202 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaatta 296  Q
    |||| |||||||| ||||||| |||| || |||  |||||||||||||||||| | || |||||| |  |||||||||||||| ||| |||||||    
T  15256261 taaaatgtaaagtaagaaaattaaag-ttcttagtgtaacaaactcatgatttatcaaaatgtacttacaatatctacatttagtttgttaatta 15256354  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 39421524 - 39421614
Alignment:
Q  204 aagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaat 294  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||| | ||||| | |||||||||| ||| |||| |||||    
T  39421524 aagtgtaaagtgagaaaatcaaaggttgttattttaacaaactcatgatttgttatggtgtacttctaatatctacctttgatttgttaat 39421614  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 1070788 - 1070700
Alignment:
Q  202 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttat 290  Q
    ||||||||||||||| ||||| || | |||||||| ||||||| ||||||||||||||||||||  || ||||||||  ||||||||||    
T  1070788 taaagtgtaaagtgaaaaaataaaggtttgttatcataacaaattcatgatttgttaagatgtatttgcaatatctatctttaatttat 1070700  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 306
Target Start/End: Complemental strand, 3143293 - 3143194
Alignment:
Q  207 tgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaattgata 306  Q
    ||||||||||||| |||||   |||||||  |||||||||| |||||||||| ||| ||| || | |||||||||||   || ||||||| |||||||||    
T  3143293 tgtaaagtgagaatatcaagtgttgttattttaacaaactcctgatttgttatgatatacttgcagtatctacatttgtgttgttaattagcaattgata 3143194  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 328
Target Start/End: Original strand, 18345704 - 18345832
Alignment:
Q  199 gagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaac 298  Q
    ||||||||| ||||||  ||||||||| | ||||||| | |||||||||||||||||||| || |||| |  ||||| ||| ||| ||||||||||||||    
T  18345704 gagtaaagtataaagtacgaaaatcaagggttgttattgcaacaaactcatgatttgttatgacgtacctacaatatatacttttcatttattaattaac 18345803  T
Q  299 aattgataattatctactttacactctaaa 328  Q
      ||||| |||  | |||||||||||||||    
T  18345804 ggttgat-attgcccactttacactctaaa 18345832  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 306
Target Start/End: Complemental strand, 6233882 - 6233786
Alignment:
Q  209 taaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaattgata 306  Q
    |||| |||||||||||| |||| ||||  ||||||||||||||||| ||| ||  ||| | |||||  ||| |||||||||||||||||| |||||||    
T  6233882 taaaatgagaaaatcaatgattattattttaacaaactcatgattt-ttatgaattacttataataattacttttaatttattaattaacgattgata 6233786  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 1815612 - 1815573
Alignment:
Q  209 taaagtgagaaaatcaaagattgttatcgtaacaaactca 248  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  1815612 taaagcgagaaaatcaaagattcttatcgtaacaaactca 1815573  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 29815416 - 29815329
Alignment:
Q  209 taaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaa 297  Q
    |||||||||| |||||| | ||||| | ||||||||||||||| | | || ||||||| |  ||||||||| ||| |||||||||||||    
T  29815416 taaagtgagataatcaagggttgttgttgtaacaaactcatga-tggctatgatgtacctacaatatctacctttgatttattaattaa 29815329  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 29822526 - 29822586
Alignment:
Q  246 tcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaacaattgata 306  Q
    |||||||||||||  |||| | |  ||||||||  ||||||||||||||||||||||||||    
T  29822526 tcatgatttgttactatgttccttcaatatctatctttaatttattaattaacaattgata 29822586  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 41417151 - 41417252
Alignment:
Q  198 cgagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgta-atatctacatttaatttattaatta 296  Q
    |||| |||||||||||| |||||||||| | ||||||| ||||||||||| ||||||| || |||| || || | |||||||| ||||||||||||| ||    
T  41417151 cgagaaaagtgtaaagtaagaaaatcaagggttgttattgtaacaaactcgtgatttgctatgatgcacctgaatatatctacctttaatttattaaata 41417250  T
Q  297 ac 298  Q
    ||    
T  41417251 ac 41417252  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 39736734 - 39736684
Alignment:
Q  208 gtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgtta 258  Q
    ||||||| |||||||||||| ||||||| |||||||||||||| |||||||    
T  39736734 gtaaagtaagaaaatcaaaggttgttatggtaacaaactcatggtttgtta 39736684  T

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Target: scaffold0352 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 14196 - 14115
Alignment:
Q  216 agaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatatctacatttaatttattaattaa 297  Q
    |||||||||| | |||||||  |||||||| |||||||| ||| ||||||| |  ||||| ||| ||| |||||||||||||    
T  14196 agaaaatcaatggttgttattttaacaaacgcatgatttattatgatgtacctaaaatatatacttttgatttattaattaa 14115  T

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