View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21174_low_14 (Length: 246)
Name: NF21174_low_14
Description: NF21174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21174_low_14 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 63 - 246
Target Start/End: Complemental strand, 16383440 - 16383257
Alignment:
| Q |
63 |
acatattggtgattttccttattatcnnnnnnngaagatcattaatgaccaaaaggaaatgccactagttgtttatgtgtctcgtgaaaaaagaccacat |
162 |
Q |
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| T |
16383440 |
acatattgatgattttccttattatctttttttgaagatcattaatgaccaaaaggaaatgccactagttgtttatgtgtctcgtgaaaaaagaccacat |
16383341 |
T |
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| Q |
163 |
gttcctcatagatacaaaggaggagctctcaatacattggtgtgtactcatttaatttgatctctaaacaatcctcataatttt |
246 |
Q |
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| T |
16383340 |
gttcctcatagatacaaaggaggagctctcaatacattggtgtgtactcatttaatttaatctctaaacaatgctcataatttt |
16383257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 16384329 - 16384289
Alignment:
| Q |
22 |
gactatatctatataaattatgtagaataatttagttaaat |
62 |
Q |
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| T |
16384329 |
gactatatctatataaattatgtggaataatttagttaaat |
16384289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 17582836 - 17582707
Alignment:
| Q |
96 |
gaagatcattaatgaccaaaaggaaatgccactagttgtttatgtgtctcgtgaaaaaagaccacatgttcctcatagatacaaaggaggagctctcaat |
195 |
Q |
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| T |
17582836 |
gaagattattaatgacgaaaaggaaatgccactggttgtttatgtgtctcgtgaaagaagaccagatgttcctcatagatacaaaggaggagcacttaat |
17582737 |
T |
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| Q |
196 |
acattggtgtgtactcatttaatttgatct |
225 |
Q |
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| T |
17582736 |
acattggtgtgtactcatttaatttgatct |
17582707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 271402 - 271480
Alignment:
| Q |
130 |
gttgtttatgtgtctcgtgaaaaaagaccacatgttcctcatagatacaaaggaggagctctcaatacattggtgtgta |
208 |
Q |
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| T |
271402 |
gttgtttatgtgtctcgtgaaagaaggccatcacttcctcacaaattcaaaggaggtgccctcaatacattggtgtgta |
271480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 15181 - 15295
Alignment:
| Q |
96 |
gaagatcattaatgaccaaaaggaaatgccactagttgtttatgtgtctcgtgaaaaaagaccacatgttcctcatagatacaaaggaggagctctcaat |
195 |
Q |
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| T |
15181 |
gaagatcattaatgaccaaaaagaaatgccactagttgtttatgtgtctcgtgaaaaaagaccaaatgttcctcacagattcaaaggaggagctctcaat |
15280 |
T |
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| Q |
196 |
acattggtgtgtact |
210 |
Q |
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| T |
15281 |
acattggtatgtact |
15295 |
T |
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