View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21174_low_2 (Length: 533)

Name: NF21174_low_2
Description: NF21174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21174_low_2
NF21174_low_2
[»] chr1 (7 HSPs)
chr1 (1-512)||(13109998-13110510)
chr1 (43-483)||(13097592-13098031)
chr1 (215-512)||(13182783-13183080)
chr1 (36-215)||(13182426-13182605)
chr1 (469-512)||(13097530-13097573)
chr1 (6-46)||(20288030-20288071)
chr1 (5-41)||(21697156-21697192)
[»] chr8 (4 HSPs)
chr8 (1-38)||(34608657-34608694)
chr8 (5-44)||(29197290-29197329)
chr8 (1-47)||(29233783-29233830)
chr8 (5-37)||(38701942-38701974)
[»] chr3 (2 HSPs)
chr3 (1-40)||(31577415-31577454)
chr3 (1-37)||(51187966-51188002)
[»] chr2 (3 HSPs)
chr2 (1-36)||(19368595-19368630)
chr2 (18-47)||(15977196-15977225)
chr2 (5-41)||(10857647-10857683)
[»] chr6 (1 HSPs)
chr6 (1-35)||(9952193-9952227)
[»] chr7 (2 HSPs)
chr7 (5-37)||(37858335-37858367)
chr7 (5-37)||(45863021-45863053)
[»] chr5 (1 HSPs)
chr5 (5-41)||(5187854-5187890)


Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 13110510 - 13109998
Alignment:
Q  1 tttaaaaagatatgggtc-aaaagtgcaattaagcctaaaaattaaaagccaatatttttgaatcgattaacgcagtcttcttccactaaactgccaccg 99  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  13110510 tttaaaaagatatgggtccaaaagtgcaattaaacctaaaaattaaaagccaatttttttgaattgattaacgcagtcttcttccactaaactgccaccg 13110411  T
Q  100 tcatttatgccattgttgaaatcttttcagataattttttatctagttagcttaataaacacaataacagtttagcaactgaaccatattatggcaatag 199  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13110410 tcatttatgccattgttgaaatcttttcagataattttttaactagttagcttaataaacacaataacagtttagcaactgaaccatattatggcaatag 13110311  T
Q  200 caatatgataattagttgtcaacaaactgattaacgtaataattaatagagtaacagctaacaaaatgaaagcgaacgaaccatgatgagttaaatcatg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13110310 caatatgataattagttgtcaacaaactgattaacgtaataattaatagagtaacagctaacaaaatgaaagcgaacgaaccatgatgagttaaatcatg 13110211  T
Q  300 gttaatatatttactaatttattgaaacaccgttgcataatcgacactccattttccaaataaagaaatcttttaaccactaatcactttcagtgttgat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13110210 gttaatatatttactaatttattgaaacaccgttgcataatcgacactccattttccaaataaagaaatcttttaaccactaatcactttcagtgttgat 13110111  T
Q  400 ttgagttttaatgcaaagcggcatttccataggcgtagcgtaattcggagttagtagttaactgtcattaactagttccttcgtcatcataattacttca 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13110110 ttgagttttaatgcaaagcggcatttccataggcgtagcgtaattaggagttagtagttaactgtcattaactagttccttcgtaatcataattacttca 13110011  T
Q  500 tctgtcccccaag 512  Q
    |||||||||||||    
T  13110010 tctgtcccccaag 13109998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 43 - 483
Target Start/End: Complemental strand, 13098031 - 13097592
Alignment:
Q  43 taaaagccaatatttttgaatcgattaacgcagtcttcttccactaaactgccaccgtcatttatgccattgttgaaatcttttcagataattttttatc 142  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13098031 taaaagccaatatttttgaattgattaacgcagtgttcttccactaaactgccaccgtcatttatgccattgttgaaatcttttcagataattttttaac 13097932  T
Q  143 tagttagcttaataaacacaataacagtttagcaactgaaccatattatggcaatagcaatatgataattagttgtcaacaaactgattaacgtaataat 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13097931 tagttagcttaataaacacaataacagtttagcaactgaaccatat-atggcaatagcaatatgataattagttgtcaacaaactgattaacgtaataat 13097833  T
Q  243 taatagagtaacagctaacaaaatgaaagcgaacgaaccatgatgagttaaatcatggttaatatatttactaatttattgaaacaccgttgcataatcg 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  13097832 taatagagtaacagctaacaaaatgaaagcgaacgaaccatgatgagttaaatcatggtcaaaatatttactaatttattgaaacaccgttgcataatcg 13097733  T
Q  343 acactccattttccaaataaagaaatcttttaaccactaatcactttcagtgttgatttgagttttaatgcaaagcggcatttccataggcgtagcgtaa 442  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13097732 atactccattttccaaataaagaaatcttttaaccactaatcactttcagtgttgatttgagttttaatacaaagcggcatttccataggcgtagcgtaa 13097633  T
Q  443 ttcggagttagtagttaactgtcattaactagttccttcgt 483  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  13097632 ttaggagttagtagttaactgtcattaactagttccttcgt 13097592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 215 - 512
Target Start/End: Original strand, 13182783 - 13183080
Alignment:
Q  215 ttgtcaacaaactgattaacgtaataattaatagagtaacagctaacaaaatgaaagcgaacgaaccatgatgagttaaatcatggttaatatatttact 314  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13182783 ttgtcaacaaactgattaacgtaataattaattgagtaacagctaacaaaatgaaagcgaacgaaccatgatgagttaaatcatggttaatatatttact 13182882  T
Q  315 aatttattgaaacaccgttgcataatcgacactccattttccaaataaagaaatcttttaaccactaatcactttcagtgttgatttgagttttaatgca 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13182883 aatttattgaaacaccgttgcataatcgacactccattttccaaataaagaaatcatttaaccactaatcactttcagtgttgatttgagttttaatgca 13182982  T
Q  415 aagcggcatttccataggcgtagcgtaattcggagttagtagttaactgtcattaactagttccttcgtcatcataattacttcatctgtcccccaag 512  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13182983 aagcggcatttccatagacgtagcgtaattaggagttagtagttaactgtcattaactagttccttcgtaatcataattacttcatctgtcccccaag 13183080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 13182426 - 13182605
Alignment:
Q  36 taaaaattaaaagccaatatttttgaatcgattaacgcagtcttcttccactaaactgccaccgtcatttatgccattgttgaaatcttttcagataatt 135  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||||||    
T  13182426 taaaaattaaaagccaatatttttcaattgattaacgtagtcttcttccactaaactgccaccgacatttatgccactgttgaaagcttttcaaataatt 13182525  T
Q  136 ttttatctagttagcttaataaacacaataacagtttagcaactgaaccatattatggcaatagcaatatgataattagt 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13182526 ttttaactagttagcttaataaacacaataacagtttagcaactgaaccatattatggcaatagcaatatgataattagt 13182605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 469 - 512
Target Start/End: Complemental strand, 13097573 - 13097530
Alignment:
Q  469 aactagttccttcgtcatcataattacttcatctgtcccccaag 512  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  13097573 aactagttccttcgtaatcataattacttcatctgtcccccaag 13097530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 20288030 - 20288071
Alignment:
Q  6 aaagatatgggtc-aaaagtgcaattaagcctaaaaattaaa 46  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  20288030 aaagatatgggtccaaaagtgcaattaagcctaaatattaaa 20288071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 21697156 - 21697192
Alignment:
Q  5 aaaagatatgggtcaaaagtgcaattaagcctaaaaa 41  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  21697156 aaaagataggggtcaaaagtgcaattgagcctaaaaa 21697192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34608657 - 34608694
Alignment:
Q  1 tttaaaaagatatgggtcaaaagtgcaattaagcctaa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34608657 tttaaaaagatatgggtcaaaagtgcaattaagcctaa 34608694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 29197329 - 29197290
Alignment:
Q  5 aaaagatatgggtcaaaagtgcaattaagcctaaaaatta 44  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  29197329 aaaagataggggtcaaaagtgcaattaagcctaaatatta 29197290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29233783 - 29233830
Alignment:
Q  1 tttaaaaagatatgggtc-aaaagtgcaattaagcctaaaaattaaaa 47  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||    
T  29233783 tttaaaaagatagaggtccaaaagtgcaattaagcctaaaaattaaaa 29233830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 38701942 - 38701974
Alignment:
Q  5 aaaagatatgggtcaaaagtgcaattaagccta 37  Q
    |||||||| ||||||||||||||||||||||||    
T  38701942 aaaagataggggtcaaaagtgcaattaagccta 38701974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31577454 - 31577415
Alignment:
Q  1 tttaaaaagatatgggtcaaaagtgcaattaagcctaaaa 40  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  31577454 tttaaaaagataggggtcaaaagtgcaattaaacctaaaa 31577415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51187966 - 51188002
Alignment:
Q  1 tttaaaaagatatgggtcaaaagtgcaattaagccta 37  Q
    ||||||||||||  |||||||||||||||||||||||    
T  51187966 tttaaaaagatagaggtcaaaagtgcaattaagccta 51188002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 19368630 - 19368595
Alignment:
Q  1 tttaaaaagatatgggtcaaaagtgcaattaagcct 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  19368630 tttaaaaagataggggtcaaaagtgcaattaagcct 19368595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 15977225 - 15977196
Alignment:
Q  18 caaaagtgcaattaagcctaaaaattaaaa 47  Q
    ||||||||||||||||||||||||||||||    
T  15977225 caaaagtgcaattaagcctaaaaattaaaa 15977196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 10857647 - 10857683
Alignment:
Q  5 aaaagatatgggtcaaaagtgcaattaagcctaaaaa 41  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  10857647 aaaagataggggccaaaagtgcaattaagcctaaaaa 10857683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9952193 - 9952227
Alignment:
Q  1 tttaaaaagatatgggtcaaaagtgcaattaagcc 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  9952193 tttaaaaagataggggtcaaaagtgcaattaagcc 9952227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 37858335 - 37858367
Alignment:
Q  5 aaaagatatgggtcaaaagtgcaattaagccta 37  Q
    |||||||| ||||||||||||||||||||||||    
T  37858335 aaaagataggggtcaaaagtgcaattaagccta 37858367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 45863053 - 45863021
Alignment:
Q  5 aaaagatatgggtcaaaagtgcaattaagccta 37  Q
    |||||||| ||||||||||||||||||||||||    
T  45863053 aaaagataggggtcaaaagtgcaattaagccta 45863021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 5187854 - 5187890
Alignment:
Q  5 aaaagatatgggtcaaaagtgcaattaagcctaaaaa 41  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  5187854 aaaagataaggggcaaaagtgcaattaagcctaaaaa 5187890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University